dbCAN Logo

Cluster: HRGMv2_4800_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4800_1 HRGMv2_4800_1_103 113487 114191 + 3.D.10.1.2
TC HRGMv2_4800_1 HRGMv2_4800_1_104 114214 116172 + 3.D.10.1.2
TC HRGMv2_4800_1 HRGMv2_4800_1_105 116203 116973 + 3.D.10.1.2
NULL(UNKNOWN) HRGMv2_4800_1 HRGMv2_4800_1_106 117660 119291 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4800_1 HRGMv2_4800_1_107 119632 120351 + PEP-CTERM
CAZyme HRGMv2_4800_1 HRGMv2_4800_1_108 120497 121414 + GT2
pfam HRGMv2_4800_1 HRGMv2_4800_1_109 121550 122422 + PEP-CTERM
NULL(UNKNOWN) HRGMv2_4800_1 HRGMv2_4800_1_110 122449 124077 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4800_1 HRGMv2_4800_1_111 124395 126212 + GH29
Gene ID: HRGMv2_4800_1_103
Type: TC
Location: 113487 - 114191 (+)
Gene ID: HRGMv2_4800_1_104
Type: TC
Location: 114214 - 116172 (+)
Gene ID: HRGMv2_4800_1_105
Type: TC
Location: 116203 - 116973 (+)
Gene ID: HRGMv2_4800_1_106
Type:
Location: 117660 - 119291 (+)
Gene ID: HRGMv2_4800_1_107
Type: pfam
Location: 119632 - 120351 (+)
Gene ID: HRGMv2_4800_1_108
Type: CAZyme
Location: 120497 - 121414 (+)
Gene ID: HRGMv2_4800_1_109
Type: pfam
Location: 121550 - 122422 (+)
Gene ID: HRGMv2_4800_1_110
Type:
Location: 122449 - 124077 (-)
Gene ID: HRGMv2_4800_1_111
Type: CAZyme
Location: 124395 - 126212 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List