Cluster: HRGMv2_4775_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4775_16 | HRGMv2_4775_16_27 | 34764 | 36764 | - | 3.A.11.3.1 |
| pfam | HRGMv2_4775_16 | HRGMv2_4775_16_28 | 36777 | 37568 | - | UDG |
| NULL(UNKNOWN) | HRGMv2_4775_16 | HRGMv2_4775_16_29 | 37764 | 39506 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4775_16 | HRGMv2_4775_16_30 | 39516 | 40652 | + | GT28 |
Gene ID: HRGMv2_4775_16_27
Type: TC
Location: 34764 - 36764 (-)
Type: TC
Location: 34764 - 36764 (-)
Gene ID: HRGMv2_4775_16_28
Type: pfam
Location: 36777 - 37568 (-)
Type: pfam
Location: 36777 - 37568 (-)
Gene ID: HRGMv2_4775_16_29
Type:
Location: 37764 - 39506 (+)
Type:
Location: 37764 - 39506 (+)
Gene ID: HRGMv2_4775_16_30
Type: CAZyme
Location: 39516 - 40652 (+)
Type: CAZyme
Location: 39516 - 40652 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.