Cluster: HRGMv2_4626_CGC3
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4626_2 | HRGMv2_4626_2_5 | 5266 | 6654 | - | 9.B.18.1.1 |
| TF | HRGMv2_4626_2 | HRGMv2_4626_2_6 | 6928 | 7593 | - | Trans_reg_C |
| TF | HRGMv2_4626_2 | HRGMv2_4626_2_7 | 7688 | 8392 | - | Trans_reg_C |
| TC | HRGMv2_4626_2 | HRGMv2_4626_2_8 | 8977 | 11058 | - | 9.B.14.1.27 |
| pfam | HRGMv2_4626_2 | HRGMv2_4626_2_9 | 11055 | 11822 | - | Caps_syn_GfcC_C | Caps_syn_GfcC_N |
| pfam | HRGMv2_4626_2 | HRGMv2_4626_2_10 | 11819 | 12448 | - | YjbF |
| TC | HRGMv2_4626_2 | HRGMv2_4626_2_11 | 12492 | 13607 | - | 1.B.18.3.8 |
| pfam | HRGMv2_4626_2 | HRGMv2_4626_2_12 | 14299 | 15708 | - | NTP_transferase | MannoseP_isomer | Cupin_2 | ManC_GMP_beta-helix |
| STP | HRGMv2_4626_2 | HRGMv2_4626_2_13 | 15737 | 16207 | - | NUDIX |
| CAZyme | HRGMv2_4626_2 | HRGMv2_4626_2_14 | 16211 | 17419 | - | GT4 |
| pfam | HRGMv2_4626_2 | HRGMv2_4626_2_15 | 17419 | 18396 | - | Epimerase | GDP_Man_Dehyd |
| pfam | HRGMv2_4626_2 | HRGMv2_4626_2_16 | 18399 | 19520 | - | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | HRGMv2_4626_2 | HRGMv2_4626_2_17 | 19582 | 20538 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_4626_2 | HRGMv2_4626_2_18 | 20535 | 21092 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4626_2 | HRGMv2_4626_2_19 | 21114 | 21653 | - | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_4626_2 | HRGMv2_4626_2_20 | 21650 | 22843 | - | GT4 |
Gene ID: HRGMv2_4626_2_5
Type: TC
Location: 5266 - 6654 (-)
Type: TC
Location: 5266 - 6654 (-)
Gene ID: HRGMv2_4626_2_6
Type: TF
Location: 6928 - 7593 (-)
Type: TF
Location: 6928 - 7593 (-)
Gene ID: HRGMv2_4626_2_7
Type: TF
Location: 7688 - 8392 (-)
Type: TF
Location: 7688 - 8392 (-)
Gene ID: HRGMv2_4626_2_8
Type: TC
Location: 8977 - 11058 (-)
Type: TC
Location: 8977 - 11058 (-)
Gene ID: HRGMv2_4626_2_9
Type: pfam
Location: 11055 - 11822 (-)
Type: pfam
Location: 11055 - 11822 (-)
Gene ID: HRGMv2_4626_2_10
Type: pfam
Location: 11819 - 12448 (-)
Type: pfam
Location: 11819 - 12448 (-)
Gene ID: HRGMv2_4626_2_11
Type: TC
Location: 12492 - 13607 (-)
Type: TC
Location: 12492 - 13607 (-)
Gene ID: HRGMv2_4626_2_12
Type: pfam
Location: 14299 - 15708 (-)
Type: pfam
Location: 14299 - 15708 (-)
Gene ID: HRGMv2_4626_2_13
Type: STP
Location: 15737 - 16207 (-)
Type: STP
Location: 15737 - 16207 (-)
Gene ID: HRGMv2_4626_2_14
Type: CAZyme
Location: 16211 - 17419 (-)
Type: CAZyme
Location: 16211 - 17419 (-)
Gene ID: HRGMv2_4626_2_15
Type: pfam
Location: 17419 - 18396 (-)
Type: pfam
Location: 17419 - 18396 (-)
Gene ID: HRGMv2_4626_2_16
Type: pfam
Location: 18399 - 19520 (-)
Type: pfam
Location: 18399 - 19520 (-)
Gene ID: HRGMv2_4626_2_17
Type: CAZyme
Location: 19582 - 20538 (-)
Type: CAZyme
Location: 19582 - 20538 (-)
Gene ID: HRGMv2_4626_2_18
Type:
Location: 20535 - 21092 (-)
Type:
Location: 20535 - 21092 (-)
Gene ID: HRGMv2_4626_2_19
Type: pfam
Location: 21114 - 21653 (-)
Type: pfam
Location: 21114 - 21653 (-)
Gene ID: HRGMv2_4626_2_20
Type: CAZyme
Location: 21650 - 22843 (-)
Type: CAZyme
Location: 21650 - 22843 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.