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Cluster: HRGMv2_4564_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4564_8 HRGMv2_4564_8_41 44633 45742 + GT4
CAZyme HRGMv2_4564_8 HRGMv2_4564_8_42 45739 46737 + GT2
NULL(UNKNOWN) HRGMv2_4564_8 HRGMv2_4564_8_43 46786 48009 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4564_8 HRGMv2_4564_8_44 48026 49318 + GT4
CAZyme HRGMv2_4564_8 HRGMv2_4564_8_45 49315 50337 + GT2
CAZyme HRGMv2_4564_8 HRGMv2_4564_8_46 50434 51456 + GT2
CAZyme HRGMv2_4564_8 HRGMv2_4564_8_47 51505 52491 + GT2
STP HRGMv2_4564_8 HRGMv2_4564_8_48 52535 54100 + NIR_SIR | NIR_SIR_ferr
CAZyme HRGMv2_4564_8 HRGMv2_4564_8_49 54253 55506 + GT4
CAZyme HRGMv2_4564_8 HRGMv2_4564_8_50 55503 56573 + GT2
TC HRGMv2_4564_8 HRGMv2_4564_8_51 56758 57627 + 3.A.1.103.4
TC HRGMv2_4564_8 HRGMv2_4564_8_52 57643 58935 + 3.A.1.103.5
CAZyme HRGMv2_4564_8 HRGMv2_4564_8_53 58939 59934 + GT100
Gene ID: HRGMv2_4564_8_41
Type: CAZyme
Location: 44633 - 45742 (+)
Gene ID: HRGMv2_4564_8_42
Type: CAZyme
Location: 45739 - 46737 (+)
Gene ID: HRGMv2_4564_8_43
Type:
Location: 46786 - 48009 (+)
Gene ID: HRGMv2_4564_8_44
Type: CAZyme
Location: 48026 - 49318 (+)
Gene ID: HRGMv2_4564_8_45
Type: CAZyme
Location: 49315 - 50337 (+)
Gene ID: HRGMv2_4564_8_46
Type: CAZyme
Location: 50434 - 51456 (+)
Gene ID: HRGMv2_4564_8_47
Type: CAZyme
Location: 51505 - 52491 (+)
Gene ID: HRGMv2_4564_8_48
Type: STP
Location: 52535 - 54100 (+)
Gene ID: HRGMv2_4564_8_49
Type: CAZyme
Location: 54253 - 55506 (+)
Gene ID: HRGMv2_4564_8_50
Type: CAZyme
Location: 55503 - 56573 (+)
Gene ID: HRGMv2_4564_8_51
Type: TC
Location: 56758 - 57627 (+)
Gene ID: HRGMv2_4564_8_52
Type: TC
Location: 57643 - 58935 (+)
Gene ID: HRGMv2_4564_8_53
Type: CAZyme
Location: 58939 - 59934 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4564_8_41 vegetarian > omnivore 1.21171 0.00861

🧭 Explore Read Mapping of CGC

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