Cluster: HRGMv2_4563_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4563
- CGC Family ID: CGCFAM_00235
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_66 | HRGMv2_4563_66_9 | 6544 | 7023 | - | 3.A.7.19.1 |
| pfam | HRGMv2_4563_66 | HRGMv2_4563_66_10 | 7037 | 7321 | - | Ribosomal_S6 |
| TC | HRGMv2_4563_66 | HRGMv2_4563_66_11 | 7740 | 9104 | + | 2.A.38.1.1 |
| TC | HRGMv2_4563_66 | HRGMv2_4563_66_12 | 9115 | 10590 | + | 2.A.38.1.1 |
| NULL(UNKNOWN) | HRGMv2_4563_66 | HRGMv2_4563_66_13 | 10953 | 11486 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4563_66 | HRGMv2_4563_66_14 | 11603 | 12421 | + | CE4 |
| CAZyme | HRGMv2_4563_66 | HRGMv2_4563_66_15 | 12505 | 13008 | + | GH4 |
Gene ID: HRGMv2_4563_66_9
Type: TC
Location: 6544 - 7023 (-)
Type: TC
Location: 6544 - 7023 (-)
Gene ID: HRGMv2_4563_66_10
Type: pfam
Location: 7037 - 7321 (-)
Type: pfam
Location: 7037 - 7321 (-)
Gene ID: HRGMv2_4563_66_11
Type: TC
Location: 7740 - 9104 (+)
Type: TC
Location: 7740 - 9104 (+)
Gene ID: HRGMv2_4563_66_12
Type: TC
Location: 9115 - 10590 (+)
Type: TC
Location: 9115 - 10590 (+)
Gene ID: HRGMv2_4563_66_13
Type:
Location: 10953 - 11486 (-)
Type:
Location: 10953 - 11486 (-)
Gene ID: HRGMv2_4563_66_14
Type: CAZyme
Location: 11603 - 12421 (+)
Type: CAZyme
Location: 11603 - 12421 (+)
Gene ID: HRGMv2_4563_66_15
Type: CAZyme
Location: 12505 - 13008 (+)
Type: CAZyme
Location: 12505 - 13008 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4563_66_15 | vegan > omnivore | 1.33596 | 0.00778 |