dbCAN Logo

Cluster: HRGMv2_4563_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4563_30 HRGMv2_4563_30_4 2144 4066 + 4.A.2.1.20
pfam HRGMv2_4563_30 HRGMv2_4563_30_5 4244 5320 - PFK
TC HRGMv2_4563_30 HRGMv2_4563_30_6 5960 7747 + 8.A.59.2.1
TC HRGMv2_4563_30 HRGMv2_4563_30_7 7744 9399 + 3.A.1.1.29
TF HRGMv2_4563_30 HRGMv2_4563_30_8 9439 10974 - HTH_AraC
TC HRGMv2_4563_30 HRGMv2_4563_30_9 11288 12757 + 3.A.1.1.29
TC HRGMv2_4563_30 HRGMv2_4563_30_10 12776 13711 + 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_4563_30 HRGMv2_4563_30_11 13856 15628 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4563_30 HRGMv2_4563_30_12 15758 18667 + GH94
CAZyme HRGMv2_4563_30 HRGMv2_4563_30_13 18846 21119 + GH31_3
CAZyme HRGMv2_4563_30 HRGMv2_4563_30_14 21132 23078 + GH42
Gene ID: HRGMv2_4563_30_4
Type: TC
Location: 2144 - 4066 (+)
Gene ID: HRGMv2_4563_30_5
Type: pfam
Location: 4244 - 5320 (-)
Gene ID: HRGMv2_4563_30_6
Type: TC
Location: 5960 - 7747 (+)
Gene ID: HRGMv2_4563_30_7
Type: TC
Location: 7744 - 9399 (+)
Gene ID: HRGMv2_4563_30_8
Type: TF
Location: 9439 - 10974 (-)
Gene ID: HRGMv2_4563_30_9
Type: TC
Location: 11288 - 12757 (+)
Gene ID: HRGMv2_4563_30_10
Type: TC
Location: 12776 - 13711 (+)
Gene ID: HRGMv2_4563_30_11
Type:
Location: 13856 - 15628 (+)
Gene ID: HRGMv2_4563_30_12
Type: CAZyme
Location: 15758 - 18667 (+)
Gene ID: HRGMv2_4563_30_13
Type: CAZyme
Location: 18846 - 21119 (+)
Gene ID: HRGMv2_4563_30_14
Type: CAZyme
Location: 21132 - 23078 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List