Cluster: HRGMv2_4563_CGC12
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4563
- CGC Family ID: CGCFAM_06771
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_8 | HRGMv2_4563_8_18 | 25521 | 27776 | - | 2.A.16.2.2 |
| pfam | HRGMv2_4563_8 | HRGMv2_4563_8_19 | 27789 | 28361 | - | Isochorismatase |
| NULL(UNKNOWN) | HRGMv2_4563_8 | HRGMv2_4563_8_20 | 28521 | 29522 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4563_8 | HRGMv2_4563_8_21 | 29712 | 31073 | + | 2.A.66.1.23 |
| TC | HRGMv2_4563_8 | HRGMv2_4563_8_22 | 31085 | 31693 | + | 9.B.28.1.2 |
| TF | HRGMv2_4563_8 | HRGMv2_4563_8_23 | 31744 | 32652 | - | HTH_AraC | HTH_AraC |
| STP | HRGMv2_4563_8 | HRGMv2_4563_8_24 | 32946 | 34331 | + | SBP_bac_1 |
| TC | HRGMv2_4563_8 | HRGMv2_4563_8_25 | 34428 | 35342 | + | 3.A.1.1.11 |
| TC | HRGMv2_4563_8 | HRGMv2_4563_8_26 | 35361 | 36203 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_4563_8 | HRGMv2_4563_8_27 | 36210 | 37772 | + | CBM91 | GH43_11 |
| CAZyme | HRGMv2_4563_8 | HRGMv2_4563_8_28 | 37778 | 39217 | + | GH63 |
| pfam | HRGMv2_4563_8 | HRGMv2_4563_8_29 | 39254 | 40042 | + | Polysacc_deac_1 |
| CAZyme | HRGMv2_4563_8 | HRGMv2_4563_8_30 | 40077 | 41411 | + | GH28 |
| TC | HRGMv2_4563_8 | HRGMv2_4563_8_31 | 41506 | 43071 | - | 2.A.2.1.1 |
| CAZyme | HRGMv2_4563_8 | HRGMv2_4563_8_32 | 43244 | 46243 | - | GH3 |
| CAZyme | HRGMv2_4563_8 | HRGMv2_4563_8_33 | 46425 | 47360 | - | GH2 |
Gene ID: HRGMv2_4563_8_18
Type: TC
Location: 25521 - 27776 (-)
Type: TC
Location: 25521 - 27776 (-)
Gene ID: HRGMv2_4563_8_19
Type: pfam
Location: 27789 - 28361 (-)
Type: pfam
Location: 27789 - 28361 (-)
Gene ID: HRGMv2_4563_8_20
Type:
Location: 28521 - 29522 (+)
Type:
Location: 28521 - 29522 (+)
Gene ID: HRGMv2_4563_8_21
Type: TC
Location: 29712 - 31073 (+)
Type: TC
Location: 29712 - 31073 (+)
Gene ID: HRGMv2_4563_8_22
Type: TC
Location: 31085 - 31693 (+)
Type: TC
Location: 31085 - 31693 (+)
Gene ID: HRGMv2_4563_8_23
Type: TF
Location: 31744 - 32652 (-)
Type: TF
Location: 31744 - 32652 (-)
Gene ID: HRGMv2_4563_8_24
Type: STP
Location: 32946 - 34331 (+)
Type: STP
Location: 32946 - 34331 (+)
Gene ID: HRGMv2_4563_8_25
Type: TC
Location: 34428 - 35342 (+)
Type: TC
Location: 34428 - 35342 (+)
Gene ID: HRGMv2_4563_8_26
Type: TC
Location: 35361 - 36203 (+)
Type: TC
Location: 35361 - 36203 (+)
Gene ID: HRGMv2_4563_8_27
Type: CAZyme
Location: 36210 - 37772 (+)
Type: CAZyme
Location: 36210 - 37772 (+)
Gene ID: HRGMv2_4563_8_28
Type: CAZyme
Location: 37778 - 39217 (+)
Type: CAZyme
Location: 37778 - 39217 (+)
Gene ID: HRGMv2_4563_8_29
Type: pfam
Location: 39254 - 40042 (+)
Type: pfam
Location: 39254 - 40042 (+)
Gene ID: HRGMv2_4563_8_30
Type: CAZyme
Location: 40077 - 41411 (+)
Type: CAZyme
Location: 40077 - 41411 (+)
Gene ID: HRGMv2_4563_8_31
Type: TC
Location: 41506 - 43071 (-)
Type: TC
Location: 41506 - 43071 (-)
Gene ID: HRGMv2_4563_8_32
Type: CAZyme
Location: 43244 - 46243 (-)
Type: CAZyme
Location: 43244 - 46243 (-)
Gene ID: HRGMv2_4563_8_33
Type: CAZyme
Location: 46425 - 47360 (-)
Type: CAZyme
Location: 46425 - 47360 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.