Cluster: HRGMv2_4563_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4563
- CGC Family ID: CGCFAM_00345
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_37 | 44891 | 46441 | - | GH43_10 |
| NULL(UNKNOWN) | HRGMv2_4563_1 | HRGMv2_4563_1_38 | 46434 | 48455 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4563_1 | HRGMv2_4563_1_39 | 48452 | 50050 | - | CBM91 | GH43_11 |
| TC | HRGMv2_4563_1 | HRGMv2_4563_1_40 | 50055 | 50903 | - | 3.A.1.1.11 |
| TC | HRGMv2_4563_1 | HRGMv2_4563_1_41 | 50924 | 51832 | - | 3.A.1.1.11 |
| STP | HRGMv2_4563_1 | HRGMv2_4563_1_42 | 51930 | 53300 | - | SBP_bac_1 |
| TC | HRGMv2_4563_1 | HRGMv2_4563_1_43 | 53495 | 55264 | - | 8.A.59.2.1 |
Gene ID: HRGMv2_4563_1_37
Type: CAZyme
Location: 44891 - 46441 (-)
Type: CAZyme
Location: 44891 - 46441 (-)
Gene ID: HRGMv2_4563_1_38
Type:
Location: 46434 - 48455 (-)
Type:
Location: 46434 - 48455 (-)
Gene ID: HRGMv2_4563_1_39
Type: CAZyme
Location: 48452 - 50050 (-)
Type: CAZyme
Location: 48452 - 50050 (-)
Gene ID: HRGMv2_4563_1_40
Type: TC
Location: 50055 - 50903 (-)
Type: TC
Location: 50055 - 50903 (-)
Gene ID: HRGMv2_4563_1_41
Type: TC
Location: 50924 - 51832 (-)
Type: TC
Location: 50924 - 51832 (-)
Gene ID: HRGMv2_4563_1_42
Type: STP
Location: 51930 - 53300 (-)
Type: STP
Location: 51930 - 53300 (-)
Gene ID: HRGMv2_4563_1_43
Type: TC
Location: 53495 - 55264 (-)
Type: TC
Location: 53495 - 55264 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.