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Cluster: HRGMv2_4558_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4558_38 HRGMv2_4558_38_1 19 1569 + GH77
CAZyme HRGMv2_4558_38 HRGMv2_4558_38_2 1589 3949 + GT35
TC HRGMv2_4558_38 HRGMv2_4558_38_3 4336 5637 + 3.A.1.1.27
TC HRGMv2_4558_38 HRGMv2_4558_38_4 5879 7375 + 3.A.1.1.27
TC HRGMv2_4558_38 HRGMv2_4558_38_5 7375 8250 + 3.A.1.1.27
TF HRGMv2_4558_38 HRGMv2_4558_38_6 8291 9322 + LacI
CAZyme HRGMv2_4558_38 HRGMv2_4558_38_7 9409 10977 + GH13_36
CAZyme HRGMv2_4558_38 HRGMv2_4558_38_8 10992 12896 + GH13_14
pfam HRGMv2_4558_38 HRGMv2_4558_38_9 13268 13978 + Recombinase
TF HRGMv2_4558_38 HRGMv2_4558_38_10 14059 14874 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_4558_38 HRGMv2_4558_38_11 14981 17032 + GH2
NULL(UNKNOWN) HRGMv2_4558_38 HRGMv2_4558_38_12 17075 17911 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4558_38 HRGMv2_4558_38_13 19085 22384 + 9.B.106.3.1
Gene ID: HRGMv2_4558_38_1
Type: CAZyme
Location: 19 - 1569 (+)
Gene ID: HRGMv2_4558_38_2
Type: CAZyme
Location: 1589 - 3949 (+)
Gene ID: HRGMv2_4558_38_3
Type: TC
Location: 4336 - 5637 (+)
Gene ID: HRGMv2_4558_38_4
Type: TC
Location: 5879 - 7375 (+)
Gene ID: HRGMv2_4558_38_5
Type: TC
Location: 7375 - 8250 (+)
Gene ID: HRGMv2_4558_38_6
Type: TF
Location: 8291 - 9322 (+)
Gene ID: HRGMv2_4558_38_7
Type: CAZyme
Location: 9409 - 10977 (+)
Gene ID: HRGMv2_4558_38_8
Type: CAZyme
Location: 10992 - 12896 (+)
Gene ID: HRGMv2_4558_38_9
Type: pfam
Location: 13268 - 13978 (+)
Gene ID: HRGMv2_4558_38_10
Type: TF
Location: 14059 - 14874 (-)
Gene ID: HRGMv2_4558_38_11
Type: CAZyme
Location: 14981 - 17032 (+)
Gene ID: HRGMv2_4558_38_12
Type:
Location: 17075 - 17911 (+)
Gene ID: HRGMv2_4558_38_13
Type: TC
Location: 19085 - 22384 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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