Cluster: HRGMv2_4550_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4550
- CGC Family ID: CGCFAM_00142
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4550_2 | HRGMv2_4550_2_143 | 158174 | 159256 | + | GH179 |
| NULL(UNKNOWN) | HRGMv2_4550_2 | HRGMv2_4550_2_144 | 159253 | 160074 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4550_2 | HRGMv2_4550_2_145 | 160094 | 160942 | + | AP_endonuc_2 |
| TC | HRGMv2_4550_2 | HRGMv2_4550_2_146 | 161127 | 162056 | + | 3.A.1.1.10 |
| TC | HRGMv2_4550_2 | HRGMv2_4550_2_147 | 162069 | 162974 | + | 3.A.1.1.10 |
| TC | HRGMv2_4550_2 | HRGMv2_4550_2_148 | 163036 | 164718 | + | 3.A.1.1.10 |
Gene ID: HRGMv2_4550_2_143
Type: CAZyme
Location: 158174 - 159256 (+)
Type: CAZyme
Location: 158174 - 159256 (+)
Gene ID: HRGMv2_4550_2_144
Type:
Location: 159253 - 160074 (+)
Type:
Location: 159253 - 160074 (+)
Gene ID: HRGMv2_4550_2_145
Type: pfam
Location: 160094 - 160942 (+)
Type: pfam
Location: 160094 - 160942 (+)
Gene ID: HRGMv2_4550_2_146
Type: TC
Location: 161127 - 162056 (+)
Type: TC
Location: 161127 - 162056 (+)
Gene ID: HRGMv2_4550_2_147
Type: TC
Location: 162069 - 162974 (+)
Type: TC
Location: 162069 - 162974 (+)
Gene ID: HRGMv2_4550_2_148
Type: TC
Location: 163036 - 164718 (+)
Type: TC
Location: 163036 - 164718 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp934869045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.