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Cluster: HRGMv2_4550_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4550_17 HRGMv2_4550_17_1 193 1974 - 8.A.59.2.1
TF HRGMv2_4550_17 HRGMv2_4550_17_2 1967 3097 - HTH_AraC | HTH_AraC
TC HRGMv2_4550_17 HRGMv2_4550_17_3 3237 4169 + 3.A.1.1.10
TC HRGMv2_4550_17 HRGMv2_4550_17_4 4169 5044 + 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_4550_17 HRGMv2_4550_17_5 5084 6715 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4550_17 HRGMv2_4550_17_6 6783 9344 + GH2
sulfatase HRGMv2_4550_17 HRGMv2_4550_17_7 9376 10815 + S1_27
CAZyme HRGMv2_4550_17 HRGMv2_4550_17_8 11000 12385 - GH165
Gene ID: HRGMv2_4550_17_1
Type: TC
Location: 193 - 1974 (-)
Gene ID: HRGMv2_4550_17_2
Type: TF
Location: 1967 - 3097 (-)
Gene ID: HRGMv2_4550_17_3
Type: TC
Location: 3237 - 4169 (+)
Gene ID: HRGMv2_4550_17_4
Type: TC
Location: 4169 - 5044 (+)
Gene ID: HRGMv2_4550_17_5
Type:
Location: 5084 - 6715 (+)
Gene ID: HRGMv2_4550_17_6
Type: CAZyme
Location: 6783 - 9344 (+)
Gene ID: HRGMv2_4550_17_7
Type: sulfatase
Location: 9376 - 10815 (+)
Gene ID: HRGMv2_4550_17_8
Type: CAZyme
Location: 11000 - 12385 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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