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Cluster: HRGMv2_4525_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4525_19 HRGMv2_4525_19_12 15432 17015 + 3.A.1.1.10
TC HRGMv2_4525_19 HRGMv2_4525_19_13 17093 18058 + 3.A.1.1.10
TC HRGMv2_4525_19 HRGMv2_4525_19_14 18052 18954 + 3.A.1.1.29
pfam HRGMv2_4525_19 HRGMv2_4525_19_15 19072 21789 + Glyco_hydro_63 | MGH1-like_GH
NULL(UNKNOWN) HRGMv2_4525_19 HRGMv2_4525_19_16 21814 23736 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4525_19 HRGMv2_4525_19_17 23987 25339 + 3.A.1.1.45
TC HRGMv2_4525_19 HRGMv2_4525_19_18 25489 26331 + 3.A.1.1.45
TC HRGMv2_4525_19 HRGMv2_4525_19_19 26332 27168 + 3.A.1.1.45
TF HRGMv2_4525_19 HRGMv2_4525_19_20 27204 28235 + LacI
CAZyme HRGMv2_4525_19 HRGMv2_4525_19_21 28259 29752 + GH77
Gene ID: HRGMv2_4525_19_12
Type: TC
Location: 15432 - 17015 (+)
Gene ID: HRGMv2_4525_19_13
Type: TC
Location: 17093 - 18058 (+)
Gene ID: HRGMv2_4525_19_14
Type: TC
Location: 18052 - 18954 (+)
Gene ID: HRGMv2_4525_19_15
Type: pfam
Location: 19072 - 21789 (+)
Gene ID: HRGMv2_4525_19_16
Type:
Location: 21814 - 23736 (+)
Gene ID: HRGMv2_4525_19_17
Type: TC
Location: 23987 - 25339 (+)
Gene ID: HRGMv2_4525_19_18
Type: TC
Location: 25489 - 26331 (+)
Gene ID: HRGMv2_4525_19_19
Type: TC
Location: 26332 - 27168 (+)
Gene ID: HRGMv2_4525_19_20
Type: TF
Location: 27204 - 28235 (+)
Gene ID: HRGMv2_4525_19_21
Type: CAZyme
Location: 28259 - 29752 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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