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Cluster: HRGMv2_4525_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4525_16 HRGMv2_4525_16_6 10100 11011 - 3.A.1.1.10
TC HRGMv2_4525_16 HRGMv2_4525_16_7 11041 11904 - 3.A.1.1.10
NULL(UNKNOWN) HRGMv2_4525_16 HRGMv2_4525_16_8 12241 14127 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4525_16 HRGMv2_4525_16_9 14124 15992 + GH20
pfam HRGMv2_4525_16 HRGMv2_4525_16_10 16021 17304 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme HRGMv2_4525_16 HRGMv2_4525_16_11 17327 19807 + GH3
pfam HRGMv2_4525_16 HRGMv2_4525_16_12 19854 21056 + GlcNAc_2-epim
pfam HRGMv2_4525_16 HRGMv2_4525_16_13 21072 22589 + DUF4127
CAZyme HRGMv2_4525_16 HRGMv2_4525_16_14 22951 24867 + GT5
Gene ID: HRGMv2_4525_16_6
Type: TC
Location: 10100 - 11011 (-)
Gene ID: HRGMv2_4525_16_7
Type: TC
Location: 11041 - 11904 (-)
Gene ID: HRGMv2_4525_16_8
Type:
Location: 12241 - 14127 (+)
Gene ID: HRGMv2_4525_16_9
Type: CAZyme
Location: 14124 - 15992 (+)
Gene ID: HRGMv2_4525_16_10
Type: pfam
Location: 16021 - 17304 (+)
Gene ID: HRGMv2_4525_16_11
Type: CAZyme
Location: 17327 - 19807 (+)
Gene ID: HRGMv2_4525_16_12
Type: pfam
Location: 19854 - 21056 (+)
Gene ID: HRGMv2_4525_16_13
Type: pfam
Location: 21072 - 22589 (+)
Gene ID: HRGMv2_4525_16_14
Type: CAZyme
Location: 22951 - 24867 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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