dbCAN Logo

Cluster: HRGMv2_4519_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4519_5 HRGMv2_4519_5_24 26023 26814 + 2.A.102.4.4
NULL(UNKNOWN) HRGMv2_4519_5 HRGMv2_4519_5_25 26811 26975 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4519_5 HRGMv2_4519_5_26 27108 27902 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4519_5 HRGMv2_4519_5_27 28179 29888 + 8.A.59.2.1
TF HRGMv2_4519_5 HRGMv2_4519_5_28 29892 31490 + HTH_AraC
CAZyme HRGMv2_4519_5 HRGMv2_4519_5_29 31566 33530 - PL12_1
CAZyme HRGMv2_4519_5 HRGMv2_4519_5_30 33631 34779 - GH88
TC HRGMv2_4519_5 HRGMv2_4519_5_31 35062 35895 - 3.A.1.1.36
TC HRGMv2_4519_5 HRGMv2_4519_5_32 35909 36832 - 3.A.1.1.11
Gene ID: HRGMv2_4519_5_24
Type: TC
Location: 26023 - 26814 (+)
Gene ID: HRGMv2_4519_5_25
Type:
Location: 26811 - 26975 (+)
Gene ID: HRGMv2_4519_5_26
Type:
Location: 27108 - 27902 (-)
Gene ID: HRGMv2_4519_5_27
Type: TC
Location: 28179 - 29888 (+)
Gene ID: HRGMv2_4519_5_28
Type: TF
Location: 29892 - 31490 (+)
Gene ID: HRGMv2_4519_5_29
Type: CAZyme
Location: 31566 - 33530 (-)
Gene ID: HRGMv2_4519_5_30
Type: CAZyme
Location: 33631 - 34779 (-)
Gene ID: HRGMv2_4519_5_31
Type: TC
Location: 35062 - 35895 (-)
Gene ID: HRGMv2_4519_5_32
Type: TC
Location: 35909 - 36832 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4519_5_24 vegetarian > omnivore 1.05944 0.02242

🧭 Explore Read Mapping of CGC

← Back to Cluster List