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Cluster: HRGMv2_4519_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4519_4 HRGMv2_4519_4_45 46835 47629 - GT2
NULL(UNKNOWN) HRGMv2_4519_4 HRGMv2_4519_4_46 47724 49454 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4519_4 HRGMv2_4519_4_47 49479 50318 - GT6
TC HRGMv2_4519_4 HRGMv2_4519_4_48 50315 51841 - 2.A.66.1.40
CAZyme HRGMv2_4519_4 HRGMv2_4519_4_49 51896 52900 - GT2
CAZyme HRGMv2_4519_4 HRGMv2_4519_4_50 52920 53840 - GT11
CAZyme HRGMv2_4519_4 HRGMv2_4519_4_51 53837 54943 - GT4
NULL(UNKNOWN) HRGMv2_4519_4 HRGMv2_4519_4_52 54986 55891 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4519_4 HRGMv2_4519_4_53 55884 56996 - GT4
pfam HRGMv2_4519_4 HRGMv2_4519_4_54 56993 57982 - GINT1_N
CAZyme HRGMv2_4519_4 HRGMv2_4519_4_55 57979 59142 - GT4
Gene ID: HRGMv2_4519_4_45
Type: CAZyme
Location: 46835 - 47629 (-)
Gene ID: HRGMv2_4519_4_46
Type:
Location: 47724 - 49454 (-)
Gene ID: HRGMv2_4519_4_47
Type: CAZyme
Location: 49479 - 50318 (-)
Gene ID: HRGMv2_4519_4_48
Type: TC
Location: 50315 - 51841 (-)
Gene ID: HRGMv2_4519_4_49
Type: CAZyme
Location: 51896 - 52900 (-)
Gene ID: HRGMv2_4519_4_50
Type: CAZyme
Location: 52920 - 53840 (-)
Gene ID: HRGMv2_4519_4_51
Type: CAZyme
Location: 53837 - 54943 (-)
Gene ID: HRGMv2_4519_4_52
Type:
Location: 54986 - 55891 (-)
Gene ID: HRGMv2_4519_4_53
Type: CAZyme
Location: 55884 - 56996 (-)
Gene ID: HRGMv2_4519_4_54
Type: pfam
Location: 56993 - 57982 (-)
Gene ID: HRGMv2_4519_4_55
Type: CAZyme
Location: 57979 - 59142 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4519_4_47 vegan > omnivore 1.13232 0.00699
HRGMv2_4519_4_47 vegetarian > omnivore 1.21353 0.02242

🧭 Explore Read Mapping of CGC

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