Cluster: HRGMv2_4434_CGC10
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4434
- CGC Family ID: CGCFAM_01791
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4434_20 | HRGMv2_4434_20_4 | 6563 | 7933 | + | GH16_3 |
| TC | HRGMv2_4434_20 | HRGMv2_4434_20_5 | 8034 | 8966 | + | 3.A.1.1.20 |
| TC | HRGMv2_4434_20 | HRGMv2_4434_20_6 | 9020 | 9973 | + | 3.A.1.1.36 |
| STP | HRGMv2_4434_20 | HRGMv2_4434_20_7 | 9989 | 12787 | + | SBP_bac_1 |
| TC | HRGMv2_4434_20 | HRGMv2_4434_20_8 | 12831 | 13703 | + | 3.A.1.1.20 |
| TC | HRGMv2_4434_20 | HRGMv2_4434_20_9 | 13703 | 14572 | + | 3.A.1.1.36 |
| pfam | HRGMv2_4434_20 | HRGMv2_4434_20_10 | 14641 | 16764 | + | Yip1 |
| pfam | HRGMv2_4434_20 | HRGMv2_4434_20_11 | 16845 | 19403 | + | DUF5696 |
| CAZyme | HRGMv2_4434_20 | HRGMv2_4434_20_12 | 19474 | 21327 | + | GH20 |
| NULL(UNKNOWN) | HRGMv2_4434_20 | HRGMv2_4434_20_13 | 21359 | 21874 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4434_20 | HRGMv2_4434_20_14 | 21954 | 22649 | + | GH18 |
| NULL(UNKNOWN) | HRGMv2_4434_20 | HRGMv2_4434_20_15 | 22917 | 24041 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4434_20 | HRGMv2_4434_20_16 | 24050 | 24922 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4434_20 | HRGMv2_4434_20_17 | 24954 | 25964 | + | GH18 |
| CAZyme | HRGMv2_4434_20 | HRGMv2_4434_20_18 | 26001 | 27245 | + | GH27 |
Gene ID: HRGMv2_4434_20_4
Type: CAZyme
Location: 6563 - 7933 (+)
Type: CAZyme
Location: 6563 - 7933 (+)
Gene ID: HRGMv2_4434_20_5
Type: TC
Location: 8034 - 8966 (+)
Type: TC
Location: 8034 - 8966 (+)
Gene ID: HRGMv2_4434_20_6
Type: TC
Location: 9020 - 9973 (+)
Type: TC
Location: 9020 - 9973 (+)
Gene ID: HRGMv2_4434_20_7
Type: STP
Location: 9989 - 12787 (+)
Type: STP
Location: 9989 - 12787 (+)
Gene ID: HRGMv2_4434_20_8
Type: TC
Location: 12831 - 13703 (+)
Type: TC
Location: 12831 - 13703 (+)
Gene ID: HRGMv2_4434_20_9
Type: TC
Location: 13703 - 14572 (+)
Type: TC
Location: 13703 - 14572 (+)
Gene ID: HRGMv2_4434_20_10
Type: pfam
Location: 14641 - 16764 (+)
Type: pfam
Location: 14641 - 16764 (+)
Gene ID: HRGMv2_4434_20_11
Type: pfam
Location: 16845 - 19403 (+)
Type: pfam
Location: 16845 - 19403 (+)
Gene ID: HRGMv2_4434_20_12
Type: CAZyme
Location: 19474 - 21327 (+)
Type: CAZyme
Location: 19474 - 21327 (+)
Gene ID: HRGMv2_4434_20_13
Type:
Location: 21359 - 21874 (+)
Type:
Location: 21359 - 21874 (+)
Gene ID: HRGMv2_4434_20_14
Type: CAZyme
Location: 21954 - 22649 (+)
Type: CAZyme
Location: 21954 - 22649 (+)
Gene ID: HRGMv2_4434_20_15
Type:
Location: 22917 - 24041 (+)
Type:
Location: 22917 - 24041 (+)
Gene ID: HRGMv2_4434_20_16
Type:
Location: 24050 - 24922 (+)
Type:
Location: 24050 - 24922 (+)
Gene ID: HRGMv2_4434_20_17
Type: CAZyme
Location: 24954 - 25964 (+)
Type: CAZyme
Location: 24954 - 25964 (+)
Gene ID: HRGMv2_4434_20_18
Type: CAZyme
Location: 26001 - 27245 (+)
Type: CAZyme
Location: 26001 - 27245 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.