Cluster: HRGMv2_4127_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4127
- CGC Family ID: CGCFAM_00730
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4127_5 | HRGMv2_4127_5_19 | 22963 | 24417 | - | 2.A.66.2.2 |
| NULL(UNKNOWN) | HRGMv2_4127_5 | HRGMv2_4127_5_20 | 24424 | 25479 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4127_5 | HRGMv2_4127_5_21 | 25476 | 26303 | - | GT32 |
| NULL(UNKNOWN) | HRGMv2_4127_5 | HRGMv2_4127_5_22 | 26300 | 27619 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4127_5 | HRGMv2_4127_5_23 | 27622 | 28656 | - | GT2 |
| CAZyme | HRGMv2_4127_5 | HRGMv2_4127_5_24 | 28647 | 29501 | - | GT2 |
Gene ID: HRGMv2_4127_5_19
Type: TC
Location: 22963 - 24417 (-)
Type: TC
Location: 22963 - 24417 (-)
Gene ID: HRGMv2_4127_5_20
Type:
Location: 24424 - 25479 (-)
Type:
Location: 24424 - 25479 (-)
Gene ID: HRGMv2_4127_5_21
Type: CAZyme
Location: 25476 - 26303 (-)
Type: CAZyme
Location: 25476 - 26303 (-)
Gene ID: HRGMv2_4127_5_22
Type:
Location: 26300 - 27619 (-)
Type:
Location: 26300 - 27619 (-)
Gene ID: HRGMv2_4127_5_23
Type: CAZyme
Location: 27622 - 28656 (-)
Type: CAZyme
Location: 27622 - 28656 (-)
Gene ID: HRGMv2_4127_5_24
Type: CAZyme
Location: 28647 - 29501 (-)
Type: CAZyme
Location: 28647 - 29501 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.