Genome Details
Selected Rep_genome_ID: HRGMv2_4127
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_4127 | 2,185,130 | 96.23% | 0.806% | US | North America | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_4127_CGC14 | CGCFAM_00012 | Yes | 3 | 1 | host glycan/beta-glucan |
| HRGMv2_4127_CGC17 | CGCFAM_00012 | Yes | 4 | 1 | host glycan/beta-glucan |
| HRGMv2_4127_CGC5 | CGCFAM_00019 | Yes | 4 | 1 | |
| HRGMv2_4127_CGC20 | CGCFAM_00027 | Yes | 3 | 1 | |
| HRGMv2_4127_CGC4 | CGCFAM_00280 | Yes | 5 | 3 | |
| HRGMv2_4127_CGC10 | CGCFAM_00508 | Yes | 7 | 2 | |
| HRGMv2_4127_CGC9 | CGCFAM_00672 | Yes | 4 | 1 | |
| HRGMv2_4127_CGC1 | CGCFAM_00730 | Yes | 6 | 3 | |
| HRGMv2_4127_CGC6 | CGCFAM_03025 | Yes | 4 | 1 | |
| HRGMv2_4127_CGC13 | CGCFAM_08642 | Yes | 4 | 1 |
Top CAZyme Families