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Cluster: HRGMv2_4050_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4050_3 HRGMv2_4050_3_12 16412 19273 + GH2
STP HRGMv2_4050_3 HRGMv2_4050_3_13 19309 20952 + SBP_bac_1
NULL(UNKNOWN) HRGMv2_4050_3 HRGMv2_4050_3_14 20942 21901 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4050_3 HRGMv2_4050_3_15 21882 22811 + 3.A.1.1.6
NULL(UNKNOWN) HRGMv2_4050_3 HRGMv2_4050_3_16 22826 24079 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4050_3 HRGMv2_4050_3_17 24098 25600 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4050_3 HRGMv2_4050_3_18 25613 27271 + GH78
NULL(UNKNOWN) HRGMv2_4050_3 HRGMv2_4050_3_19 27367 28770 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4050_3 HRGMv2_4050_3_20 28843 30207 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4050_3 HRGMv2_4050_3_21 30332 31669 + GH163
Gene ID: HRGMv2_4050_3_12
Type: CAZyme
Location: 16412 - 19273 (+)
Gene ID: HRGMv2_4050_3_13
Type: STP
Location: 19309 - 20952 (+)
Gene ID: HRGMv2_4050_3_14
Type:
Location: 20942 - 21901 (+)
Gene ID: HRGMv2_4050_3_15
Type: TC
Location: 21882 - 22811 (+)
Gene ID: HRGMv2_4050_3_16
Type:
Location: 22826 - 24079 (+)
Gene ID: HRGMv2_4050_3_17
Type:
Location: 24098 - 25600 (+)
Gene ID: HRGMv2_4050_3_18
Type: CAZyme
Location: 25613 - 27271 (+)
Gene ID: HRGMv2_4050_3_19
Type:
Location: 27367 - 28770 (+)
Gene ID: HRGMv2_4050_3_20
Type:
Location: 28843 - 30207 (+)
Gene ID: HRGMv2_4050_3_21
Type: CAZyme
Location: 30332 - 31669 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4050_3_18 vegetarian > vegan 1.96530 0.03127
HRGMv2_4050_3_19 vegetarian > vegan 1.36183 0.03127

🧭 Explore Read Mapping of CGC

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