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Cluster: HRGMv2_3999_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3999_11 HRGMv2_3999_11_16 13415 14569 + GT1
NULL(UNKNOWN) HRGMv2_3999_11 HRGMv2_3999_11_17 14936 16636 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3999_11 HRGMv2_3999_11_18 16660 16998 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3999_11 HRGMv2_3999_11_19 16985 19255 + 3.A.11.3.1
pfam HRGMv2_3999_11 HRGMv2_3999_11_20 19525 20154 - OMP_b-brl | OMP_b-brl_2
pfam HRGMv2_3999_11 HRGMv2_3999_11_21 20222 21256 - GldN
TC HRGMv2_3999_11 HRGMv2_3999_11_22 21349 22893 - 9.A.25.1.1
pfam HRGMv2_3999_11 HRGMv2_3999_11_23 22934 23791 - GldL_N
TC HRGMv2_3999_11 HRGMv2_3999_11_24 23791 25248 - 9.A.25.1.1
Gene ID: HRGMv2_3999_11_16
Type: CAZyme
Location: 13415 - 14569 (+)
Gene ID: HRGMv2_3999_11_17
Type:
Location: 14936 - 16636 (+)
Gene ID: HRGMv2_3999_11_18
Type:
Location: 16660 - 16998 (+)
Gene ID: HRGMv2_3999_11_19
Type: TC
Location: 16985 - 19255 (+)
Gene ID: HRGMv2_3999_11_20
Type: pfam
Location: 19525 - 20154 (-)
Gene ID: HRGMv2_3999_11_21
Type: pfam
Location: 20222 - 21256 (-)
Gene ID: HRGMv2_3999_11_22
Type: TC
Location: 21349 - 22893 (-)
Gene ID: HRGMv2_3999_11_23
Type: pfam
Location: 22934 - 23791 (-)
Gene ID: HRGMv2_3999_11_24
Type: TC
Location: 23791 - 25248 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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