PROTEIN: HRGMv2_3999_11_17
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Protein File & Metadata
Source:
HRGMv2_3999_11_17.pdb
Genome ID:
Protein ID:
HRGMv2_3999_11_17
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Protein Sequence
MQPNYYHIFN MNKLKLFIST AFLAAASNAF GGGLLTNTNQ NIAFLRNPAR DAAIGIDGVY 60 SNPAGVAWLN DGLRISLNLQ NAHQTRTVST TFAPFAFGNN NNGSASKEFK GKADAPIIPS 120 LQAAYNKNKW SFQFGFAVTG GGGKCTFDNG LPSFEATVAM LPLLSENLDQ IASSIGMGQT 180 GLPKITGYGI DTYMRGRQYY YGFTLGAARK LDDHWSVYAG ARLLYGTSNY YGYVRNIQAT 240 INGQNVPASS TFATQSGVAA EAMGKYTQAA QQYQQAGDVA NAAKYAAMAK QAGMQAVVLG 300 ALGQATSDVT LNCDQTGWGI APILGVHYRA GVVDVAAKYE FKTRMRLKNR AANSESAANL 360 PMLAKYEDGK TVADDSPALL TVGAQWNALP SLRISGGYHH YFDKDAHQYD NHQKLLEGNT 420 EEYLLGAEYD INKVVQVSAG AQITDYDFTD EYMQDVSFNV SSWSLGFGVG INLTKKLKLN 480 VAYFQTFYGD YNRTTNDYGN LSATAGRIIG GIASNLASPE AGEAAAKATA ALLTTPDPNT 540 GRSVLHGSDS FTRTNRVIGV GLDIKL 566
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q9I456-F1-model_v4 | 6 | 566 | 2 | 424 | 0.739 |
0.8552 |
| AF-P10384-F1-model_v4 | 30 | 566 | 23 | 446 | 0.7111 |
0.8429 |
| AF-Q8ZNA5-F1-model_v4 | 30 | 566 | 23 | 435 | 0.7094 |
0.8505 |
| AF-Q9HVJ6-F1-model_v4 | 13 | 566 | 5 | 463 | 0.7085 |
0.7944 |
| AF-P43838-F1-model_v4 | 30 | 566 | 20 | 459 | 0.708 |
0.8234 |
| AF-Q32DJ1-F1-model_v4 | 31 | 566 | 26 | 448 | 0.7079 |
0.8429 |
| AF-Q9I2X5-F1-model_v4 | 31 | 566 | 24 | 532 | 0.6596 |
0.7197 |
| AF-O25510-F1-model_v4 | 31 | 566 | 28 | 587 | 0.5943 |
0.6456 |
Structural Homologs - CAZyme3D-Whole
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs - CAZyme-ID50
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 3dwn-assembly2.cif.gz_B | 33 | 566 | 1 | 421 | 0.7345 |
0.8501 |
| 2r4o-assembly2.cif.gz_B | 33 | 566 | 1 | 421 | 0.7337 |
0.8492 |
| 2r4p-assembly2.cif.gz_B | 33 | 566 | 1 | 418 | 0.7328 |
0.8508 |
| 3pf1-assembly2.cif.gz_B | 33 | 566 | 1 | 421 | 0.7323 |
0.8505 |
| 2r4l-assembly1.cif.gz_A | 33 | 566 | 1 | 412 | 0.7316 |
0.8546 |
| 2r4l-assembly2.cif.gz_B | 33 | 566 | 1 | 421 | 0.731 |
0.846 |
| 2r4n-assembly2.cif.gz_B | 33 | 566 | 1 | 421 | 0.7299 |
0.8449 |
| 3pgs-assembly2.cif.gz_B | 33 | 566 | 1 | 421 | 0.7298 |
0.85 |
| 2r4l-assembly3.cif.gz_C | 33 | 566 | 1 | 416 | 0.727 |
0.8453 |
| 1t1l-assembly2.cif.gz_B | 30 | 566 | 1 | 421 | 0.7256 |
0.8404 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-P80603-F1-model_v4 | 10 | 566 | 4 | 428 | 0.7355 |
0.851 |
| AF-Q8CVU7-F1-model_v4 | 31 | 566 | 24 | 446 | 0.7138 |
0.8483 |
| AF-P59741-F1-model_v4 | 30 | 566 | 23 | 446 | 0.7112 |
0.8429 |
| AF-P10384-F1-model_v4 | 30 | 566 | 23 | 446 | 0.7111 |
0.8429 |
| AF-Q8XCN6-F1-model_v4 | 30 | 566 | 23 | 446 | 0.7109 |
0.8424 |
| AF-Q8Z4Y8-F1-model_v4 | 30 | 566 | 23 | 435 | 0.7107 |
0.8525 |
| AF-Q8ZNA5-F1-model_v4 | 30 | 566 | 23 | 435 | 0.7094 |
0.8505 |
| AF-P43838-F1-model_v4 | 30 | 566 | 20 | 459 | 0.708 |
0.8234 |
| AF-P10641-F1-model_v4 | 30 | 566 | 20 | 459 | 0.7071 |
0.8221 |
| AF-H8WEC1-F1-model_v4 | 27 | 566 | 34 | 452 | 0.5888 |
0.7111 |