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Cluster: HRGMv2_3990_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3990_12 HRGMv2_3990_12_7 5092 5919 + 1.B.18.3.3
TC HRGMv2_3990_12 HRGMv2_3990_12_8 5991 8432 + 8.A.3.3.4
NULL(UNKNOWN) HRGMv2_3990_12 HRGMv2_3990_12_9 8448 9974 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3990_12 HRGMv2_3990_12_10 10017 10937 + GT32
CAZyme HRGMv2_3990_12 HRGMv2_3990_12_11 10960 11979 + GT2
pfam HRGMv2_3990_12 HRGMv2_3990_12_12 12007 12996 + Acyl_transf_3
CAZyme HRGMv2_3990_12 HRGMv2_3990_12_13 13005 13973 + GT2
NULL(UNKNOWN) HRGMv2_3990_12 HRGMv2_3990_12_14 13976 15013 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3990_12 HRGMv2_3990_12_15 15077 16087 + GT113
Gene ID: HRGMv2_3990_12_7
Type: TC
Location: 5092 - 5919 (+)
Gene ID: HRGMv2_3990_12_8
Type: TC
Location: 5991 - 8432 (+)
Gene ID: HRGMv2_3990_12_9
Type:
Location: 8448 - 9974 (+)
Gene ID: HRGMv2_3990_12_10
Type: CAZyme
Location: 10017 - 10937 (+)
Gene ID: HRGMv2_3990_12_11
Type: CAZyme
Location: 10960 - 11979 (+)
Gene ID: HRGMv2_3990_12_12
Type: pfam
Location: 12007 - 12996 (+)
Gene ID: HRGMv2_3990_12_13
Type: CAZyme
Location: 13005 - 13973 (+)
Gene ID: HRGMv2_3990_12_14
Type:
Location: 13976 - 15013 (+)
Gene ID: HRGMv2_3990_12_15
Type: CAZyme
Location: 15077 - 16087 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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