Cluster: HRGMv2_3986_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3986
- CGC Family ID: CGCFAM_10471
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3986_23 | HRGMv2_3986_23_13 | 18709 | 20943 | - | 1.B.14.3.6 |
| TC | HRGMv2_3986_23 | HRGMv2_3986_23_14 | 21308 | 23494 | + | 2.A.16.2.2 |
| pfam | HRGMv2_3986_23 | HRGMv2_3986_23_15 | 23553 | 25292 | + | tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2 |
| NULL(UNKNOWN) | HRGMv2_3986_23 | HRGMv2_3986_23_16 | 25374 | 26831 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3986_23 | HRGMv2_3986_23_17 | 26840 | 28864 | + | GH20 |
| pfam | HRGMv2_3986_23 | HRGMv2_3986_23_18 | 29022 | 29975 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| CAZyme | HRGMv2_3986_23 | HRGMv2_3986_23_19 | 30094 | 31287 | - | GH109 |
Gene ID: HRGMv2_3986_23_13
Type: TC
Location: 18709 - 20943 (-)
Type: TC
Location: 18709 - 20943 (-)
Gene ID: HRGMv2_3986_23_14
Type: TC
Location: 21308 - 23494 (+)
Type: TC
Location: 21308 - 23494 (+)
Gene ID: HRGMv2_3986_23_15
Type: pfam
Location: 23553 - 25292 (+)
Type: pfam
Location: 23553 - 25292 (+)
Gene ID: HRGMv2_3986_23_16
Type:
Location: 25374 - 26831 (+)
Type:
Location: 25374 - 26831 (+)
Gene ID: HRGMv2_3986_23_17
Type: CAZyme
Location: 26840 - 28864 (+)
Type: CAZyme
Location: 26840 - 28864 (+)
Gene ID: HRGMv2_3986_23_18
Type: pfam
Location: 29022 - 29975 (-)
Type: pfam
Location: 29022 - 29975 (-)
Gene ID: HRGMv2_3986_23_19
Type: CAZyme
Location: 30094 - 31287 (-)
Type: CAZyme
Location: 30094 - 31287 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp000318095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.