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Cluster: HRGMv2_3983_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3983_3 HRGMv2_3983_3_220 271221 274463 + 1.B.14.6.1
TC HRGMv2_3983_3 HRGMv2_3983_3_221 274475 275950 + 8.A.46.1.2
NULL(UNKNOWN) HRGMv2_3983_3 HRGMv2_3983_3_222 275950 277368 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3983_3 HRGMv2_3983_3_223 277404 279914 + GH20
CAZyme HRGMv2_3983_3 HRGMv2_3983_3_224 279936 281564 + GH20
NULL(UNKNOWN) HRGMv2_3983_3 HRGMv2_3983_3_225 281588 282703 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3983_3 HRGMv2_3983_3_226 282819 284399 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3983_3 HRGMv2_3983_3_227 284436 285470 - 2.A.1.3.36
pfam HRGMv2_3983_3 HRGMv2_3983_3_228 285487 286806 - OEP | OEP
TC HRGMv2_3983_3 HRGMv2_3983_3_229 287278 288471 + 2.A.1.2.97
NULL(UNKNOWN) HRGMv2_3983_3 HRGMv2_3983_3_230 288834 289874 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_3983_3 HRGMv2_3983_3_231 290562 291410 - HTH_AraC
TC HRGMv2_3983_3 HRGMv2_3983_3_232 291567 292712 + 2.A.6.2.4
TC HRGMv2_3983_3 HRGMv2_3983_3_233 292731 295928 + 2.A.6.2.22
TC HRGMv2_3983_3 HRGMv2_3983_3_234 295982 297346 + 1.B.17.3.5
Gene ID: HRGMv2_3983_3_220
Type: TC
Location: 271221 - 274463 (+)
Gene ID: HRGMv2_3983_3_221
Type: TC
Location: 274475 - 275950 (+)
Gene ID: HRGMv2_3983_3_222
Type:
Location: 275950 - 277368 (+)
Gene ID: HRGMv2_3983_3_223
Type: CAZyme
Location: 277404 - 279914 (+)
Gene ID: HRGMv2_3983_3_224
Type: CAZyme
Location: 279936 - 281564 (+)
Gene ID: HRGMv2_3983_3_225
Type:
Location: 281588 - 282703 (+)
Gene ID: HRGMv2_3983_3_226
Type:
Location: 282819 - 284399 (-)
Gene ID: HRGMv2_3983_3_227
Type: TC
Location: 284436 - 285470 (-)
Gene ID: HRGMv2_3983_3_228
Type: pfam
Location: 285487 - 286806 (-)
Gene ID: HRGMv2_3983_3_229
Type: TC
Location: 287278 - 288471 (+)
Gene ID: HRGMv2_3983_3_230
Type:
Location: 288834 - 289874 (+)
Gene ID: HRGMv2_3983_3_231
Type: TF
Location: 290562 - 291410 (-)
Gene ID: HRGMv2_3983_3_232
Type: TC
Location: 291567 - 292712 (+)
Gene ID: HRGMv2_3983_3_233
Type: TC
Location: 292731 - 295928 (+)
Gene ID: HRGMv2_3983_3_234
Type: TC
Location: 295982 - 297346 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_3_221 vegan > omnivore 1.05583 0.00229
HRGMv2_3983_3_224 vegan > omnivore 1.17083 0.00229

🧭 Explore Read Mapping of CGC

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