Cluster: HRGMv2_3982_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3982
- CGC Family ID: CGCFAM_09663
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3982_1 | HRGMv2_3982_1_16 | 13053 | 14087 | + | 8.A.1.1.1 |
| NULL(UNKNOWN) | HRGMv2_3982_1 | HRGMv2_3982_1_17 | 14093 | 15694 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3982_1 | HRGMv2_3982_1_18 | 15785 | 16606 | - | Glycos_transf_2 |
| CAZyme | HRGMv2_3982_1 | HRGMv2_3982_1_19 | 16608 | 17837 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_3982_1 | HRGMv2_3982_1_20 | 17840 | 18901 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3982_1 | HRGMv2_3982_1_21 | 18975 | 19250 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3982_1 | HRGMv2_3982_1_22 | 19383 | 21203 | + | 3.A.1.109.1 |
Gene ID: HRGMv2_3982_1_16
Type: TC
Location: 13053 - 14087 (+)
Type: TC
Location: 13053 - 14087 (+)
Gene ID: HRGMv2_3982_1_17
Type:
Location: 14093 - 15694 (+)
Type:
Location: 14093 - 15694 (+)
Gene ID: HRGMv2_3982_1_18
Type: pfam
Location: 15785 - 16606 (-)
Type: pfam
Location: 15785 - 16606 (-)
Gene ID: HRGMv2_3982_1_19
Type: CAZyme
Location: 16608 - 17837 (-)
Type: CAZyme
Location: 16608 - 17837 (-)
Gene ID: HRGMv2_3982_1_20
Type:
Location: 17840 - 18901 (-)
Type:
Location: 17840 - 18901 (-)
Gene ID: HRGMv2_3982_1_21
Type:
Location: 18975 - 19250 (-)
Type:
Location: 18975 - 19250 (-)
Gene ID: HRGMv2_3982_1_22
Type: TC
Location: 19383 - 21203 (+)
Type: TC
Location: 19383 - 21203 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp022767745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.