PROTEIN: HRGMv2_3982_1_17
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Protein File & Metadata
Source:
HRGMv2_3982_1_17.pdb
Genome ID:
Protein ID:
HRGMv2_3982_1_17
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Protein Sequence
MPTEHSEEVA TARRILVWKD SVPEVLRFPL MLLIIVIYML SGGVYMSAVS EMSGSLSWIK 60 EDILMAGYAS MTGLTIAFPL LFRILFRFPT RSILLVSAAV FIICDYVCMV CHYLPLVVLM 120 SFISGFFRIL STFVCWSNLQ LRITPTRDFA VFFPFLFTVI LGSVQLTDIV TGYSVSAFDW 180 RAMHRLTIGA FIVVFALVYF GMRRGYRQAP YIPFKGIDYL GGILWSLWLL CIIFICVYGE 240 HYDWFDSEEI CTAAVFAVIL LAMCLERAAS IRHPYISLRT FSQHNMIPIF ILFGCMSLMS 300 TMVSSVQNVY TGAVLGFDAR HNADLCWGVV AGIAVGAGVF FVALKRWKWR IKSIVLAGFV 360 SFLLYQIQLY FLIDASTEKY MLYLPMVFKG AGVSIVYTSL TYALAGSVTF AYYFEAMCVI 420 GFIRTSFGGP LNSAIITRLL NHVKQAATAE LGSYVDQMHP LADSFTAVLG EFQRQMLMVS 480 LKEIYGYAAI AAVLILLAIL ASDYRRYVGS GLNGMLKLTQ VWKVVRGRTQ STL 533
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-G3XD81-F1-model_v4 | 4 | 519 | 1 | 506 | 0.8346 |
0.8748 |
| AF-Q5F680-F1-model_v4 | 8 | 519 | 1 | 507 | 0.8306 |
0.8648 |
| AF-Q32DH7-F1-model_v4 | 8 | 518 | 6 | 512 | 0.8231 |
0.8654 |
| AF-P0AEJ0-F1-model_v4 | 8 | 517 | 2 | 509 | 0.8181 |
0.8584 |
| AF-P52600-F1-model_v4 | 12 | 517 | 7 | 512 | 0.8123 |
0.8559 |
| AF-A0A0H3GSP9-F1-model_v4 | 4 | 510 | 15 | 538 | 0.8073 |
0.8737 |
| AF-A0A0H3GNL5-F1-model_v4 | 8 | 513 | 9 | 520 | 0.8053 |
0.8521 |
| AF-A0A0H3GU91-F1-model_v4 | 8 | 519 | 4 | 509 | 0.8042 |
0.848 |
| AF-Q8ZMK8-F1-model_v4 | 7 | 520 | 4 | 509 | 0.8033 |
0.847 |
| AF-A0A133CZJ2-F1-model_v4 | 6 | 523 | 1 | 490 | 0.8027 |
0.8544 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-A0A160T6G0-F1-model_v4 | CBM9 | 4 | 512 | 6 | 535 | 0.7295 |
0.7971 |
| AF-A2S189-F1-model_v4 | GH3 | 1 | 514 | 1 | 415 | 0.6627 |
0.7641 |
| AF-Q6NMN6-F1-model_v4 | GT5 | 7 | 531 | 16 | 480 | 0.6611 |
0.7423 |
| ARF89445.1 | GT1 | 1 | 513 | 13 | 954 | 0.6502 |
0.8703 |
| A0A9W8R2E6 | GH88 | 1 | 521 | 37 | 504 | 0.6263 |
0.7138 |
| WBC00074.1 | CBM42 , GH2 | 1 | 517 | 5 | 495 | 0.6221 |
0.6821 |
| AF-A0A387HHJ8-F1-model_v4 | GT1 | 12 | 524 | 30 | 678 | 0.609 |
0.817 |
| AF-A0A1D7Y1M4-F1-model_v4 | GH17 | 1 | 533 | 1 | 764 | 0.5752 |
0.6914 |
| AF-A0A1J0LIF2-F1-model_v4 | GH17 | 1 | 526 | 4 | 476 | 0.5671 |
0.7579 |
| AF-A0A4P6YE09-F1-model_v4 | GH17 | 13 | 531 | 1 | 469 | 0.5641 |
0.7552 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A160T6G0 | CBM9 | 4 | 512 | 6 | 535 | 0.7295 |
0.7971 |
| A2S189 | GH3 | 1 | 514 | 1 | 415 | 0.6627 |
0.7641 |
| ARF89445.1 | GT1 | 1 | 513 | 13 | 954 | 0.6502 |
0.8703 |
| A0A9W8R2E6 | GH88 | 1 | 521 | 37 | 504 | 0.6263 |
0.7138 |
| WBC00074.1 | CBM42 , GH2 | 1 | 517 | 5 | 495 | 0.6221 |
0.6821 |
| A0A387HHJ8 | GT1 | 12 | 524 | 30 | 678 | 0.609 |
0.817 |
| A0A3C1RID2 | GH17 | 1 | 533 | 1 | 732 | 0.5692 |
0.6862 |
| AIH01647.1 | GH17 | 1 | 533 | 1 | 510 | 0.5674 |
0.718 |
| A0A7H8RF34 | CBM24 | 1 | 517 | 127 | 761 | 0.5508 |
0.6811 |
| A0A918L8E6 | GT2 | 13 | 527 | 1 | 523 | 0.5416 |
0.6349 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 8pnl-assembly1.cif.gz_A | 9 | 509 | 1 | 483 | 0.7683 |
0.8236 |
| 7y58-assembly1.cif.gz_A | 8 | 516 | 6 | 510 | 0.7654 |
0.8083 |
| 8pnl-assembly2.cif.gz_C | 9 | 509 | 1 | 486 | 0.7587 |
0.8117 |
| 7d5p-assembly2.cif.gz_B | 27 | 509 | 1 | 413 | 0.7211 |
0.8276 |
| 7d5p-assembly1.cif.gz_A | 13 | 508 | 1 | 408 | 0.7195 |
0.8296 |
| 7d5q-assembly2.cif.gz_B | 15 | 509 | 1 | 411 | 0.718 |
0.8259 |
| 6kkl-assembly1.cif.gz_A | 22 | 512 | 1 | 372 | 0.7121 |
0.8511 |
| 7d5q-assembly1.cif.gz_A | 27 | 509 | 1 | 403 | 0.7113 |
0.8247 |
| 8b1j-assembly1.cif.gz_A | 10 | 511 | 1 | 451 | 0.7066 |
0.7826 |
| 6kkj-assembly1.cif.gz_B | 24 | 508 | 1 | 357 | 0.6991 |
0.8495 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q9RQ29-F1-model_v4 | 9 | 519 | 2 | 507 | 0.8296 |
0.8662 |
| AF-P0AEJ1-F1-model_v4 | 8 | 517 | 3 | 509 | 0.8181 |
0.8598 |
| AF-P0AEJ0-F1-model_v4 | 8 | 517 | 2 | 509 | 0.8181 |
0.8584 |
| AF-P0DPR7-F1-model_v4 | 1 | 513 | 1 | 512 | 0.8171 |
0.851 |
| AF-P52600-F1-model_v4 | 12 | 517 | 7 | 512 | 0.8123 |
0.8559 |
| AF-P44927-F1-model_v4 | 12 | 514 | 7 | 510 | 0.8103 |
0.8569 |
| AF-P32369-F1-model_v4 | 5 | 514 | 3 | 475 | 0.7956 |
0.864 |
| AF-P96712-F1-model_v4 | 7 | 522 | 1 | 511 | 0.7878 |
0.8219 |
| AF-P94422-F1-model_v4 | 8 | 520 | 6 | 472 | 0.7828 |
0.8561 |
| AF-O35018-F1-model_v4 | 8 | 520 | 9 | 479 | 0.7821 |
0.8545 |