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Cluster: HRGMv2_3980_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_25 20813 21820 + GT2
pfam HRGMv2_3980_27 HRGMv2_3980_27_26 21817 22974 + FrhB_FdhB_N | FrhB_FdhB_C | Fer4_7
pfam HRGMv2_3980_27 HRGMv2_3980_27_27 22971 24122 + PS_pyruv_trans
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_28 24129 25103 + GT2
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_29 25100 25939 + GT2
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_30 26120 26827 + GT2
TC HRGMv2_3980_27 HRGMv2_3980_27_31 26854 27054 + 4.D.2.1.9
pfam HRGMv2_3980_27 HRGMv2_3980_27_32 27051 28595 + DUF6056
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_33 28655 29593 + GT2
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_34 29615 30544 + GT2
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_35 30555 31490 + GT101
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_36 31487 32461 + GT2
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_37 32464 33441 + GT2
NULL(UNKNOWN) HRGMv2_3980_27 HRGMv2_3980_27_38 33450 34745 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_39 34742 35875 + GT4
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_40 35952 37052 + GT4
CAZyme HRGMv2_3980_27 HRGMv2_3980_27_41 37065 38495 + GT4
pfam HRGMv2_3980_27 HRGMv2_3980_27_42 38492 39583 + NTP_transf_5
NULL(UNKNOWN) HRGMv2_3980_27 HRGMv2_3980_27_43 39580 40479 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3980_27 HRGMv2_3980_27_44 40495 41298 + 1.B.18.3.3
TC HRGMv2_3980_27 HRGMv2_3980_27_45 41332 43707 + 8.A.3.3.4
Gene ID: HRGMv2_3980_27_25
Type: CAZyme
Location: 20813 - 21820 (+)
Gene ID: HRGMv2_3980_27_26
Type: pfam
Location: 21817 - 22974 (+)
Gene ID: HRGMv2_3980_27_27
Type: pfam
Location: 22971 - 24122 (+)
Gene ID: HRGMv2_3980_27_28
Type: CAZyme
Location: 24129 - 25103 (+)
Gene ID: HRGMv2_3980_27_29
Type: CAZyme
Location: 25100 - 25939 (+)
Gene ID: HRGMv2_3980_27_30
Type: CAZyme
Location: 26120 - 26827 (+)
Gene ID: HRGMv2_3980_27_31
Type: TC
Location: 26854 - 27054 (+)
Gene ID: HRGMv2_3980_27_32
Type: pfam
Location: 27051 - 28595 (+)
Gene ID: HRGMv2_3980_27_33
Type: CAZyme
Location: 28655 - 29593 (+)
Gene ID: HRGMv2_3980_27_34
Type: CAZyme
Location: 29615 - 30544 (+)
Gene ID: HRGMv2_3980_27_35
Type: CAZyme
Location: 30555 - 31490 (+)
Gene ID: HRGMv2_3980_27_36
Type: CAZyme
Location: 31487 - 32461 (+)
Gene ID: HRGMv2_3980_27_37
Type: CAZyme
Location: 32464 - 33441 (+)
Gene ID: HRGMv2_3980_27_38
Type:
Location: 33450 - 34745 (+)
Gene ID: HRGMv2_3980_27_39
Type: CAZyme
Location: 34742 - 35875 (+)
Gene ID: HRGMv2_3980_27_40
Type: CAZyme
Location: 35952 - 37052 (+)
Gene ID: HRGMv2_3980_27_41
Type: CAZyme
Location: 37065 - 38495 (+)
Gene ID: HRGMv2_3980_27_42
Type: pfam
Location: 38492 - 39583 (+)
Gene ID: HRGMv2_3980_27_43
Type:
Location: 39580 - 40479 (+)
Gene ID: HRGMv2_3980_27_44
Type: TC
Location: 40495 - 41298 (+)
Gene ID: HRGMv2_3980_27_45
Type: TC
Location: 41332 - 43707 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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