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Cluster: HRGMv2_3897_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3897_13 HRGMv2_3897_13_39 46341 47621 + 2.A.49.9.2
TF HRGMv2_3897_13 HRGMv2_3897_13_40 48112 52113 - HTH_AraC
pfam HRGMv2_3897_13 HRGMv2_3897_13_41 52531 53730 + SDH_alpha | SDH_beta | SDH_beta
CAZyme HRGMv2_3897_13 HRGMv2_3897_13_42 53755 56091 + GH115
pfam HRGMv2_3897_13 HRGMv2_3897_13_43 56104 57405 + DUF6055
pfam HRGMv2_3897_13 HRGMv2_3897_13_44 57449 59122 + DUF6055
CAZyme HRGMv2_3897_13 HRGMv2_3897_13_45 59229 61304 + GH2
NULL(UNKNOWN) HRGMv2_3897_13 HRGMv2_3897_13_46 61342 63687 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3897_13 HRGMv2_3897_13_47 63823 66945 + 1.B.14.6.1
Gene ID: HRGMv2_3897_13_39
Type: TC
Location: 46341 - 47621 (+)
Gene ID: HRGMv2_3897_13_40
Type: TF
Location: 48112 - 52113 (-)
Gene ID: HRGMv2_3897_13_41
Type: pfam
Location: 52531 - 53730 (+)
Gene ID: HRGMv2_3897_13_42
Type: CAZyme
Location: 53755 - 56091 (+)
Gene ID: HRGMv2_3897_13_43
Type: pfam
Location: 56104 - 57405 (+)
Gene ID: HRGMv2_3897_13_44
Type: pfam
Location: 57449 - 59122 (+)
Gene ID: HRGMv2_3897_13_45
Type: CAZyme
Location: 59229 - 61304 (+)
Gene ID: HRGMv2_3897_13_46
Type:
Location: 61342 - 63687 (+)
Gene ID: HRGMv2_3897_13_47
Type: TC
Location: 63823 - 66945 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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