Cluster: HRGMv2_3896_CGC35
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3896_37 | HRGMv2_3896_37_7 | 10621 | 13914 | + | GH106 |
| NULL(UNKNOWN) | HRGMv2_3896_37 | HRGMv2_3896_37_8 | 14109 | 16367 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3896_37 | HRGMv2_3896_37_9 | 16453 | 18120 | + | GH35 |
| CAZyme | HRGMv2_3896_37 | HRGMv2_3896_37_10 | 18223 | 20274 | + | GH78 |
| TC | HRGMv2_3896_37 | HRGMv2_3896_37_11 | 20674 | 23766 | + | 1.B.14.6.1 |
| TC | HRGMv2_3896_37 | HRGMv2_3896_37_12 | 23780 | 25510 | + | 8.A.46.1.5 |
| pfam | HRGMv2_3896_37 | HRGMv2_3896_37_13 | 25515 | 26894 | + | DUF4960 |
| CAZyme | HRGMv2_3896_37 | HRGMv2_3896_37_14 | 26927 | 28450 | + | GH32 |
| NULL(UNKNOWN) | HRGMv2_3896_37 | HRGMv2_3896_37_15 | 28455 | 29342 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3896_37 | HRGMv2_3896_37_16 | 29411 | 30259 | - | DUF4249 |
| TC | HRGMv2_3896_37 | HRGMv2_3896_37_17 | 30259 | 32097 | - | 1.B.14.6.12 |
Gene ID: HRGMv2_3896_37_7
Type: CAZyme
Location: 10621 - 13914 (+)
Type: CAZyme
Location: 10621 - 13914 (+)
Gene ID: HRGMv2_3896_37_8
Type:
Location: 14109 - 16367 (+)
Type:
Location: 14109 - 16367 (+)
Gene ID: HRGMv2_3896_37_9
Type: CAZyme
Location: 16453 - 18120 (+)
Type: CAZyme
Location: 16453 - 18120 (+)
Gene ID: HRGMv2_3896_37_10
Type: CAZyme
Location: 18223 - 20274 (+)
Type: CAZyme
Location: 18223 - 20274 (+)
Gene ID: HRGMv2_3896_37_11
Type: TC
Location: 20674 - 23766 (+)
Type: TC
Location: 20674 - 23766 (+)
Gene ID: HRGMv2_3896_37_12
Type: TC
Location: 23780 - 25510 (+)
Type: TC
Location: 23780 - 25510 (+)
Gene ID: HRGMv2_3896_37_13
Type: pfam
Location: 25515 - 26894 (+)
Type: pfam
Location: 25515 - 26894 (+)
Gene ID: HRGMv2_3896_37_14
Type: CAZyme
Location: 26927 - 28450 (+)
Type: CAZyme
Location: 26927 - 28450 (+)
Gene ID: HRGMv2_3896_37_15
Type:
Location: 28455 - 29342 (+)
Type:
Location: 28455 - 29342 (+)
Gene ID: HRGMv2_3896_37_16
Type: pfam
Location: 29411 - 30259 (-)
Type: pfam
Location: 29411 - 30259 (-)
Gene ID: HRGMv2_3896_37_17
Type: TC
Location: 30259 - 32097 (-)
Type: TC
Location: 30259 - 32097 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.