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Cluster: HRGMv2_3896_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3896_8 HRGMv2_3896_8_51 58706 60874 - GH43_10
pfam HRGMv2_3896_8 HRGMv2_3896_8_52 60861 62273 - Sde182_NH-like | Sde0182_C
CAZyme HRGMv2_3896_8 HRGMv2_3896_8_53 62270 64630 - CBM67 | GH78
NULL(UNKNOWN) HRGMv2_3896_8 HRGMv2_3896_8_54 64627 66678 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3896_8 HRGMv2_3896_8_55 66825 68471 - SusD_RagB | SusD-like_3
TC HRGMv2_3896_8 HRGMv2_3896_8_56 68498 71641 - 1.B.14.6.2
NULL(UNKNOWN) HRGMv2_3896_8 HRGMv2_3896_8_57 71731 71868 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_3896_8 HRGMv2_3896_8_58 72041 72952 - HTH_AraC
CAZyme HRGMv2_3896_8 HRGMv2_3896_8_59 73037 74923 - GH2
CAZyme HRGMv2_3896_8 HRGMv2_3896_8_60 75104 77395 + GH3
Gene ID: HRGMv2_3896_8_51
Type: CAZyme
Location: 58706 - 60874 (-)
Gene ID: HRGMv2_3896_8_52
Type: pfam
Location: 60861 - 62273 (-)
Gene ID: HRGMv2_3896_8_53
Type: CAZyme
Location: 62270 - 64630 (-)
Gene ID: HRGMv2_3896_8_54
Type:
Location: 64627 - 66678 (-)
Gene ID: HRGMv2_3896_8_55
Type: pfam
Location: 66825 - 68471 (-)
Gene ID: HRGMv2_3896_8_56
Type: TC
Location: 68498 - 71641 (-)
Gene ID: HRGMv2_3896_8_57
Type:
Location: 71731 - 71868 (+)
Gene ID: HRGMv2_3896_8_58
Type: TF
Location: 72041 - 72952 (-)
Gene ID: HRGMv2_3896_8_59
Type: CAZyme
Location: 73037 - 74923 (-)
Gene ID: HRGMv2_3896_8_60
Type: CAZyme
Location: 75104 - 77395 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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