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Cluster: HRGMv2_3894_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3894_21 HRGMv2_3894_21_27 32572 33864 + 2.A.40.7.6
CAZyme HRGMv2_3894_21 HRGMv2_3894_21_28 34163 35485 + GH43_2
TF HRGMv2_3894_21 HRGMv2_3894_21_29 35472 39341 - HTH_AraC
NULL(UNKNOWN) HRGMv2_3894_21 HRGMv2_3894_21_30 39545 40243 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3894_21 HRGMv2_3894_21_31 40279 41730 + GH43_7 | GH43_7
TC HRGMv2_3894_21 HRGMv2_3894_21_32 42063 45218 + 1.B.14.6.1
pfam HRGMv2_3894_21 HRGMv2_3894_21_33 45259 46923 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_3894_21 HRGMv2_3894_21_34 47223 49808 + GH3
CAZyme HRGMv2_3894_21 HRGMv2_3894_21_35 49839 51776 + CE1 | CE6
STP HRGMv2_3894_21 HRGMv2_3894_21_36 51817 53145 - Peptidase_M23
pfam HRGMv2_3894_21 HRGMv2_3894_21_37 53156 53935 - Arginase
CAZyme HRGMv2_3894_21 HRGMv2_3894_21_38 54133 57432 + GH106 | GH28
TC HRGMv2_3894_21 HRGMv2_3894_21_39 57514 58776 - 9.B.10.1.1
STP HRGMv2_3894_21 HRGMv2_3894_21_40 59215 59760 + NUDIX
CAZyme HRGMv2_3894_21 HRGMv2_3894_21_41 59881 61305 - GH28
Gene ID: HRGMv2_3894_21_27
Type: TC
Location: 32572 - 33864 (+)
Gene ID: HRGMv2_3894_21_28
Type: CAZyme
Location: 34163 - 35485 (+)
Gene ID: HRGMv2_3894_21_29
Type: TF
Location: 35472 - 39341 (-)
Gene ID: HRGMv2_3894_21_30
Type:
Location: 39545 - 40243 (+)
Gene ID: HRGMv2_3894_21_31
Type: CAZyme
Location: 40279 - 41730 (+)
Gene ID: HRGMv2_3894_21_32
Type: TC
Location: 42063 - 45218 (+)
Gene ID: HRGMv2_3894_21_33
Type: pfam
Location: 45259 - 46923 (+)
Gene ID: HRGMv2_3894_21_34
Type: CAZyme
Location: 47223 - 49808 (+)
Gene ID: HRGMv2_3894_21_35
Type: CAZyme
Location: 49839 - 51776 (+)
Gene ID: HRGMv2_3894_21_36
Type: STP
Location: 51817 - 53145 (-)
Gene ID: HRGMv2_3894_21_37
Type: pfam
Location: 53156 - 53935 (-)
Gene ID: HRGMv2_3894_21_38
Type: CAZyme
Location: 54133 - 57432 (+)
Gene ID: HRGMv2_3894_21_39
Type: TC
Location: 57514 - 58776 (-)
Gene ID: HRGMv2_3894_21_40
Type: STP
Location: 59215 - 59760 (+)
Gene ID: HRGMv2_3894_21_41
Type: CAZyme
Location: 59881 - 61305 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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