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Cluster: HRGMv2_3870_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3870_43 HRGMv2_3870_43_9 10363 12192 + 2.A.38.4.2
pfam HRGMv2_3870_43 HRGMv2_3870_43_10 12196 12885 + TrkA_N
pfam HRGMv2_3870_43 HRGMv2_3870_43_11 12892 13917 - YceG
CAZyme HRGMv2_3870_43 HRGMv2_3870_43_12 14080 15618 + GH51_1
NULL(UNKNOWN) HRGMv2_3870_43 HRGMv2_3870_43_13 15859 16854 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3870_43 HRGMv2_3870_43_14 16907 17965 + 3.A.1.7.1
TC HRGMv2_3870_43 HRGMv2_3870_43_15 17986 18843 + 3.A.1.7.1
TC HRGMv2_3870_43 HRGMv2_3870_43_16 18864 19733 + 3.A.1.7.1
TC HRGMv2_3870_43 HRGMv2_3870_43_17 19721 20491 + 3.A.1.7.2
Gene ID: HRGMv2_3870_43_9
Type: TC
Location: 10363 - 12192 (+)
Gene ID: HRGMv2_3870_43_10
Type: pfam
Location: 12196 - 12885 (+)
Gene ID: HRGMv2_3870_43_11
Type: pfam
Location: 12892 - 13917 (-)
Gene ID: HRGMv2_3870_43_12
Type: CAZyme
Location: 14080 - 15618 (+)
Gene ID: HRGMv2_3870_43_13
Type:
Location: 15859 - 16854 (+)
Gene ID: HRGMv2_3870_43_14
Type: TC
Location: 16907 - 17965 (+)
Gene ID: HRGMv2_3870_43_15
Type: TC
Location: 17986 - 18843 (+)
Gene ID: HRGMv2_3870_43_16
Type: TC
Location: 18864 - 19733 (+)
Gene ID: HRGMv2_3870_43_17
Type: TC
Location: 19721 - 20491 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3870_43_10 vegetarian > vegan 1.88319 0.04511

🧭 Explore Read Mapping of CGC

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