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Cluster: HRGMv2_3868_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3868_2 HRGMv2_3868_2_56 55547 58006 + 3.A.11.3.1
CAZyme HRGMv2_3868_2 HRGMv2_3868_2_57 58009 58863 - GT2
CAZyme HRGMv2_3868_2 HRGMv2_3868_2_58 58870 59940 - GT4
pfam HRGMv2_3868_2 HRGMv2_3868_2_59 59937 61103 - Glycos_transf_1 | Glyco_trans_1_4
CAZyme HRGMv2_3868_2 HRGMv2_3868_2_60 61114 62175 - GT9
CAZyme HRGMv2_3868_2 HRGMv2_3868_2_61 62172 63881 - GT83
pfam HRGMv2_3868_2 HRGMv2_3868_2_62 63990 65657 + FTHFS
NULL(UNKNOWN) HRGMv2_3868_2 HRGMv2_3868_2_63 65669 67207 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3868_2 HRGMv2_3868_2_64 67220 69388 + GH89
TC HRGMv2_3868_2 HRGMv2_3868_2_65 69465 71150 - 3.A.1.120.6
Gene ID: HRGMv2_3868_2_56
Type: TC
Location: 55547 - 58006 (+)
Gene ID: HRGMv2_3868_2_57
Type: CAZyme
Location: 58009 - 58863 (-)
Gene ID: HRGMv2_3868_2_58
Type: CAZyme
Location: 58870 - 59940 (-)
Gene ID: HRGMv2_3868_2_59
Type: pfam
Location: 59937 - 61103 (-)
Gene ID: HRGMv2_3868_2_60
Type: CAZyme
Location: 61114 - 62175 (-)
Gene ID: HRGMv2_3868_2_61
Type: CAZyme
Location: 62172 - 63881 (-)
Gene ID: HRGMv2_3868_2_62
Type: pfam
Location: 63990 - 65657 (+)
Gene ID: HRGMv2_3868_2_63
Type:
Location: 65669 - 67207 (+)
Gene ID: HRGMv2_3868_2_64
Type: CAZyme
Location: 67220 - 69388 (+)
Gene ID: HRGMv2_3868_2_65
Type: TC
Location: 69465 - 71150 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Limisoma
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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