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Cluster: HRGMv2_3868_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3868_55 HRGMv2_3868_55_1 511 1431 + 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_3868_55 HRGMv2_3868_55_2 1428 3530 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3868_55 HRGMv2_3868_55_3 3558 5084 + 8.A.46.1.6
CAZyme HRGMv2_3868_55 HRGMv2_3868_55_4 5081 7192 + CBM32 | GH43_28
CAZyme HRGMv2_3868_55 HRGMv2_3868_55_5 7202 8578 + GH144
CAZyme HRGMv2_3868_55 HRGMv2_3868_55_6 8594 10876 + GH3
NULL(UNKNOWN) HRGMv2_3868_55 HRGMv2_3868_55_7 11006 11302 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3868_55 HRGMv2_3868_55_8 11299 11577 + ParE_toxin | YoeB_toxin
TC HRGMv2_3868_55 HRGMv2_3868_55_9 11666 13036 + 2.A.1.3.17
Gene ID: HRGMv2_3868_55_1
Type: TC
Location: 511 - 1431 (+)
Gene ID: HRGMv2_3868_55_2
Type:
Location: 1428 - 3530 (+)
Gene ID: HRGMv2_3868_55_3
Type: TC
Location: 3558 - 5084 (+)
Gene ID: HRGMv2_3868_55_4
Type: CAZyme
Location: 5081 - 7192 (+)
Gene ID: HRGMv2_3868_55_5
Type: CAZyme
Location: 7202 - 8578 (+)
Gene ID: HRGMv2_3868_55_6
Type: CAZyme
Location: 8594 - 10876 (+)
Gene ID: HRGMv2_3868_55_7
Type:
Location: 11006 - 11302 (+)
Gene ID: HRGMv2_3868_55_8
Type: pfam
Location: 11299 - 11577 (+)
Gene ID: HRGMv2_3868_55_9
Type: TC
Location: 11666 - 13036 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Limisoma
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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