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Cluster: HRGMv2_3868_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3868_52 HRGMv2_3868_52_2 1369 3171 - 3.A.1.21.1
TC HRGMv2_3868_52 HRGMv2_3868_52_3 3194 4942 - 3.A.1.21.1
NULL(UNKNOWN) HRGMv2_3868_52 HRGMv2_3868_52_4 5021 6259 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3868_52 HRGMv2_3868_52_5 6294 8867 - 1.B.14.3.6
STP HRGMv2_3868_52 HRGMv2_3868_52_6 8851 9507 - TetR_N
pfam HRGMv2_3868_52 HRGMv2_3868_52_7 9763 10398 + Toprim | RecR_ZnF | Toprim_4 | RecR_C | RecR_HhH
CAZyme HRGMv2_3868_52 HRGMv2_3868_52_8 10398 11555 + GT2
pfam HRGMv2_3868_52 HRGMv2_3868_52_9 11557 12075 + Acetyltransf_1 | FR47 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_7
TC HRGMv2_3868_52 HRGMv2_3868_52_10 12081 13943 - 3.A.1.120.6
Gene ID: HRGMv2_3868_52_2
Type: TC
Location: 1369 - 3171 (-)
Gene ID: HRGMv2_3868_52_3
Type: TC
Location: 3194 - 4942 (-)
Gene ID: HRGMv2_3868_52_4
Type:
Location: 5021 - 6259 (-)
Gene ID: HRGMv2_3868_52_5
Type: TC
Location: 6294 - 8867 (-)
Gene ID: HRGMv2_3868_52_6
Type: STP
Location: 8851 - 9507 (-)
Gene ID: HRGMv2_3868_52_7
Type: pfam
Location: 9763 - 10398 (+)
Gene ID: HRGMv2_3868_52_8
Type: CAZyme
Location: 10398 - 11555 (+)
Gene ID: HRGMv2_3868_52_9
Type: pfam
Location: 11557 - 12075 (+)
Gene ID: HRGMv2_3868_52_10
Type: TC
Location: 12081 - 13943 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Limisoma
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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