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Cluster: HRGMv2_3868_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3868_33 HRGMv2_3868_33_4 3551 6949 + 1.B.14.6.1
TC HRGMv2_3868_33 HRGMv2_3868_33_5 7004 8701 + 8.A.46.1.3
pfam HRGMv2_3868_33 HRGMv2_3868_33_6 8724 9581 + Exo_endo_phos | Exo_endo_phos_PGAP2IP
pfam HRGMv2_3868_33 HRGMv2_3868_33_7 9608 10399 + Exo_endo_phos | Exo_endo_phos_PGAP2IP
CAZyme HRGMv2_3868_33 HRGMv2_3868_33_8 10412 12421 + GH127
pfam HRGMv2_3868_33 HRGMv2_3868_33_9 12460 13482 + Exo_endo_phos
NULL(UNKNOWN) HRGMv2_3868_33 HRGMv2_3868_33_10 13495 15060 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3868_33 HRGMv2_3868_33_11 15188 17329 + GH89
NULL(UNKNOWN) HRGMv2_3868_33 HRGMv2_3868_33_12 17354 18439 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3868_33 HRGMv2_3868_33_13 18444 20615 + GH89
Gene ID: HRGMv2_3868_33_4
Type: TC
Location: 3551 - 6949 (+)
Gene ID: HRGMv2_3868_33_5
Type: TC
Location: 7004 - 8701 (+)
Gene ID: HRGMv2_3868_33_6
Type: pfam
Location: 8724 - 9581 (+)
Gene ID: HRGMv2_3868_33_7
Type: pfam
Location: 9608 - 10399 (+)
Gene ID: HRGMv2_3868_33_8
Type: CAZyme
Location: 10412 - 12421 (+)
Gene ID: HRGMv2_3868_33_9
Type: pfam
Location: 12460 - 13482 (+)
Gene ID: HRGMv2_3868_33_10
Type:
Location: 13495 - 15060 (+)
Gene ID: HRGMv2_3868_33_11
Type: CAZyme
Location: 15188 - 17329 (+)
Gene ID: HRGMv2_3868_33_12
Type:
Location: 17354 - 18439 (+)
Gene ID: HRGMv2_3868_33_13
Type: CAZyme
Location: 18444 - 20615 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Limisoma
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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