Cluster: HRGMv2_3772_CGC45
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3772
- CGC Family ID: CGCFAM_08934
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3772_41 | HRGMv2_3772_41_1 | 1 | 867 | + | 3.A.11.1.3 |
| TF | HRGMv2_3772_41 | HRGMv2_3772_41_2 | 1207 | 1557 | + | HTH_5 |
| TC | HRGMv2_3772_41 | HRGMv2_3772_41_3 | 1585 | 3570 | + | 3.A.3.6.10 |
| NULL(UNKNOWN) | HRGMv2_3772_41 | HRGMv2_3772_41_4 | 3953 | 4978 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3772_41 | HRGMv2_3772_41_5 | 5233 | 9021 | + | CBM32 | GH2 |
Gene ID: HRGMv2_3772_41_1
Type: TC
Location: 1 - 867 (+)
Type: TC
Location: 1 - 867 (+)
Gene ID: HRGMv2_3772_41_2
Type: TF
Location: 1207 - 1557 (+)
Type: TF
Location: 1207 - 1557 (+)
Gene ID: HRGMv2_3772_41_3
Type: TC
Location: 1585 - 3570 (+)
Type: TC
Location: 1585 - 3570 (+)
Gene ID: HRGMv2_3772_41_4
Type:
Location: 3953 - 4978 (+)
Type:
Location: 3953 - 4978 (+)
Gene ID: HRGMv2_3772_41_5
Type: CAZyme
Location: 5233 - 9021 (+)
Type: CAZyme
Location: 5233 - 9021 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp900545155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.