Cluster: HRGMv2_3772_CGC35
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3772
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3772_25 | HRGMv2_3772_25_21 | 26026 | 27417 | + | 5.B.3.1.1 |
| pfam | HRGMv2_3772_25 | HRGMv2_3772_25_22 | 27523 | 28854 | - | Aminotran_3 |
| pfam | HRGMv2_3772_25 | HRGMv2_3772_25_23 | 28894 | 30351 | - | DnaB | DnaB_C | AAA_25 |
| CAZyme | HRGMv2_3772_25 | HRGMv2_3772_25_24 | 30731 | 33316 | - | GH2 |
| sulfatase | HRGMv2_3772_25 | HRGMv2_3772_25_25 | 33368 | 35197 | - | S1_97 |
| pfam | HRGMv2_3772_25 | HRGMv2_3772_25_26 | 35275 | 37284 | - | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C |
| TC | HRGMv2_3772_25 | HRGMv2_3772_25_27 | 37310 | 38632 | - | 1.B.6.1.12 |
| pfam | HRGMv2_3772_25 | HRGMv2_3772_25_28 | 38666 | 40057 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| NULL(UNKNOWN) | HRGMv2_3772_25 | HRGMv2_3772_25_29 | 40088 | 40984 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3772_25 | HRGMv2_3772_25_30 | 40990 | 41736 | - | 1.B.42.1.2 |
Gene ID: HRGMv2_3772_25_21
Type: TC
Location: 26026 - 27417 (+)
Type: TC
Location: 26026 - 27417 (+)
Gene ID: HRGMv2_3772_25_22
Type: pfam
Location: 27523 - 28854 (-)
Type: pfam
Location: 27523 - 28854 (-)
Gene ID: HRGMv2_3772_25_23
Type: pfam
Location: 28894 - 30351 (-)
Type: pfam
Location: 28894 - 30351 (-)
Gene ID: HRGMv2_3772_25_24
Type: CAZyme
Location: 30731 - 33316 (-)
Type: CAZyme
Location: 30731 - 33316 (-)
Gene ID: HRGMv2_3772_25_25
Type: sulfatase
Location: 33368 - 35197 (-)
Type: sulfatase
Location: 33368 - 35197 (-)
Gene ID: HRGMv2_3772_25_26
Type: pfam
Location: 35275 - 37284 (-)
Type: pfam
Location: 35275 - 37284 (-)
Gene ID: HRGMv2_3772_25_27
Type: TC
Location: 37310 - 38632 (-)
Type: TC
Location: 37310 - 38632 (-)
Gene ID: HRGMv2_3772_25_28
Type: pfam
Location: 38666 - 40057 (-)
Type: pfam
Location: 38666 - 40057 (-)
Gene ID: HRGMv2_3772_25_29
Type:
Location: 40088 - 40984 (-)
Type:
Location: 40088 - 40984 (-)
Gene ID: HRGMv2_3772_25_30
Type: TC
Location: 40990 - 41736 (-)
Type: TC
Location: 40990 - 41736 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp900545155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.