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Cluster: HRGMv2_3504_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3504_5 HRGMv2_3504_5_66 75968 76702 + 3.A.1.2.24
TC HRGMv2_3504_5 HRGMv2_3504_5_67 76699 77631 + 3.A.1.2.1
TC HRGMv2_3504_5 HRGMv2_3504_5_68 77686 78690 + 3.A.1.2.1
STP HRGMv2_3504_5 HRGMv2_3504_5_69 78692 79546 + Peripla_BP_1
pfam HRGMv2_3504_5 HRGMv2_3504_5_70 79769 81223 - Amidase
TC HRGMv2_3504_5 HRGMv2_3504_5_71 81239 82627 - 2.A.73.1.1
pfam HRGMv2_3504_5 HRGMv2_3504_5_72 82818 83264 - HutP
STP HRGMv2_3504_5 HRGMv2_3504_5_73 83513 84955 - Pyr_redox_2
TC HRGMv2_3504_5 HRGMv2_3504_5_74 85729 86514 + 3.A.1.103.4
TC HRGMv2_3504_5 HRGMv2_3504_5_75 86517 87257 + 3.A.1.103.4
CAZyme HRGMv2_3504_5 HRGMv2_3504_5_76 87293 88465 + GT4
CAZyme HRGMv2_3504_5 HRGMv2_3504_5_77 88577 90427 + GT111 | GT8
pfam HRGMv2_3504_5 HRGMv2_3504_5_78 90450 91553 + FAD_binding_2 | Amino_oxidase | GLF | NAD_binding_8
CAZyme HRGMv2_3504_5 HRGMv2_3504_5_79 91652 92533 + GT111
NULL(UNKNOWN) HRGMv2_3504_5 HRGMv2_3504_5_80 92552 93754 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3504_5 HRGMv2_3504_5_81 93993 98249 - GT3 | GT35
CAZyme HRGMv2_3504_5 HRGMv2_3504_5_82 98283 99464 - GH57
CAZyme HRGMv2_3504_5 HRGMv2_3504_5_83 99470 100954 - GT4
CAZyme HRGMv2_3504_5 HRGMv2_3504_5_84 100955 102964 - GH133
Gene ID: HRGMv2_3504_5_66
Type: TC
Location: 75968 - 76702 (+)
Gene ID: HRGMv2_3504_5_67
Type: TC
Location: 76699 - 77631 (+)
Gene ID: HRGMv2_3504_5_68
Type: TC
Location: 77686 - 78690 (+)
Gene ID: HRGMv2_3504_5_69
Type: STP
Location: 78692 - 79546 (+)
Gene ID: HRGMv2_3504_5_70
Type: pfam
Location: 79769 - 81223 (-)
Gene ID: HRGMv2_3504_5_71
Type: TC
Location: 81239 - 82627 (-)
Gene ID: HRGMv2_3504_5_72
Type: pfam
Location: 82818 - 83264 (-)
Gene ID: HRGMv2_3504_5_73
Type: STP
Location: 83513 - 84955 (-)
Gene ID: HRGMv2_3504_5_74
Type: TC
Location: 85729 - 86514 (+)
Gene ID: HRGMv2_3504_5_75
Type: TC
Location: 86517 - 87257 (+)
Gene ID: HRGMv2_3504_5_76
Type: CAZyme
Location: 87293 - 88465 (+)
Gene ID: HRGMv2_3504_5_77
Type: CAZyme
Location: 88577 - 90427 (+)
Gene ID: HRGMv2_3504_5_78
Type: pfam
Location: 90450 - 91553 (+)
Gene ID: HRGMv2_3504_5_79
Type: CAZyme
Location: 91652 - 92533 (+)
Gene ID: HRGMv2_3504_5_80
Type:
Location: 92552 - 93754 (+)
Gene ID: HRGMv2_3504_5_81
Type: CAZyme
Location: 93993 - 98249 (-)
Gene ID: HRGMv2_3504_5_82
Type: CAZyme
Location: 98283 - 99464 (-)
Gene ID: HRGMv2_3504_5_83
Type: CAZyme
Location: 99470 - 100954 (-)
Gene ID: HRGMv2_3504_5_84
Type: CAZyme
Location: 100955 - 102964 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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