Cluster: HRGMv2_3194_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3194
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_1 | HRGMv2_3194_1_151 | 161468 | 162598 | - | CE9 |
| sulfatase | HRGMv2_3194_1 | HRGMv2_3194_1_152 | 162665 | 163390 | - | S1_9 |
| TC | HRGMv2_3194_1 | HRGMv2_3194_1_153 | 163710 | 165185 | - | 4.A.1.1.7 |
| pfam | HRGMv2_3194_1 | HRGMv2_3194_1_154 | 165539 | 166264 | - | DNA_alkylation |
| pfam | HRGMv2_3194_1 | HRGMv2_3194_1_155 | 166523 | 167197 | + | Transposase_20 |
| CAZyme | HRGMv2_3194_1 | HRGMv2_3194_1_156 | 167476 | 168681 | + | GT4 |
| pfam | HRGMv2_3194_1 | HRGMv2_3194_1_157 | 168693 | 169658 | + | GINT1_N |
| CAZyme | HRGMv2_3194_1 | HRGMv2_3194_1_158 | 169652 | 170782 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3194_1 | HRGMv2_3194_1_159 | 170772 | 171680 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3194_1 | HRGMv2_3194_1_160 | 171703 | 172815 | + | GT4 |
| CAZyme | HRGMv2_3194_1 | HRGMv2_3194_1_161 | 172812 | 173750 | + | GT11 |
| CAZyme | HRGMv2_3194_1 | HRGMv2_3194_1_162 | 173763 | 174791 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3194_1 | HRGMv2_3194_1_163 | 174804 | 176354 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3194_1 | HRGMv2_3194_1_164 | 176351 | 177196 | + | GT6 |
Gene ID: HRGMv2_3194_1_151
Type: CAZyme
Location: 161468 - 162598 (-)
Type: CAZyme
Location: 161468 - 162598 (-)
Gene ID: HRGMv2_3194_1_152
Type: sulfatase
Location: 162665 - 163390 (-)
Type: sulfatase
Location: 162665 - 163390 (-)
Gene ID: HRGMv2_3194_1_153
Type: TC
Location: 163710 - 165185 (-)
Type: TC
Location: 163710 - 165185 (-)
Gene ID: HRGMv2_3194_1_154
Type: pfam
Location: 165539 - 166264 (-)
Type: pfam
Location: 165539 - 166264 (-)
Gene ID: HRGMv2_3194_1_155
Type: pfam
Location: 166523 - 167197 (+)
Type: pfam
Location: 166523 - 167197 (+)
Gene ID: HRGMv2_3194_1_156
Type: CAZyme
Location: 167476 - 168681 (+)
Type: CAZyme
Location: 167476 - 168681 (+)
Gene ID: HRGMv2_3194_1_157
Type: pfam
Location: 168693 - 169658 (+)
Type: pfam
Location: 168693 - 169658 (+)
Gene ID: HRGMv2_3194_1_158
Type: CAZyme
Location: 169652 - 170782 (+)
Type: CAZyme
Location: 169652 - 170782 (+)
Gene ID: HRGMv2_3194_1_159
Type:
Location: 170772 - 171680 (+)
Type:
Location: 170772 - 171680 (+)
Gene ID: HRGMv2_3194_1_160
Type: CAZyme
Location: 171703 - 172815 (+)
Type: CAZyme
Location: 171703 - 172815 (+)
Gene ID: HRGMv2_3194_1_161
Type: CAZyme
Location: 172812 - 173750 (+)
Type: CAZyme
Location: 172812 - 173750 (+)
Gene ID: HRGMv2_3194_1_162
Type: CAZyme
Location: 173763 - 174791 (+)
Type: CAZyme
Location: 173763 - 174791 (+)
Gene ID: HRGMv2_3194_1_163
Type:
Location: 174804 - 176354 (+)
Type:
Location: 174804 - 176354 (+)
Gene ID: HRGMv2_3194_1_164
Type: CAZyme
Location: 176351 - 177196 (+)
Type: CAZyme
Location: 176351 - 177196 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.