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Cluster: HRGMv2_3185_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3185_20 HRGMv2_3185_20_21 19525 20313 - 2.A.5.5.2
CAZyme HRGMv2_3185_20 HRGMv2_3185_20_22 20516 22240 - GH154
CAZyme HRGMv2_3185_20 HRGMv2_3185_20_23 22265 24061 - GH2
CAZyme HRGMv2_3185_20 HRGMv2_3185_20_24 24078 25238 - GH88
TC HRGMv2_3185_20 HRGMv2_3185_20_25 25345 26205 - 3.A.1.1.36
TC HRGMv2_3185_20 HRGMv2_3185_20_26 26224 27141 - 3.A.1.1.36
TC HRGMv2_3185_20 HRGMv2_3185_20_27 27252 28577 - 3.A.1.1.40
TC HRGMv2_3185_20 HRGMv2_3185_20_28 28846 30642 + 8.A.59.2.1
TF HRGMv2_3185_20 HRGMv2_3185_20_29 30639 31928 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_3185_20 HRGMv2_3185_20_30 31918 33738 + PL33_1
NULL(UNKNOWN) HRGMv2_3185_20 HRGMv2_3185_20_31 33860 34675 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3185_20 HRGMv2_3185_20_32 34672 37482 + GH2
Gene ID: HRGMv2_3185_20_21
Type: TC
Location: 19525 - 20313 (-)
Gene ID: HRGMv2_3185_20_22
Type: CAZyme
Location: 20516 - 22240 (-)
Gene ID: HRGMv2_3185_20_23
Type: CAZyme
Location: 22265 - 24061 (-)
Gene ID: HRGMv2_3185_20_24
Type: CAZyme
Location: 24078 - 25238 (-)
Gene ID: HRGMv2_3185_20_25
Type: TC
Location: 25345 - 26205 (-)
Gene ID: HRGMv2_3185_20_26
Type: TC
Location: 26224 - 27141 (-)
Gene ID: HRGMv2_3185_20_27
Type: TC
Location: 27252 - 28577 (-)
Gene ID: HRGMv2_3185_20_28
Type: TC
Location: 28846 - 30642 (+)
Gene ID: HRGMv2_3185_20_29
Type: TF
Location: 30639 - 31928 (+)
Gene ID: HRGMv2_3185_20_30
Type: CAZyme
Location: 31918 - 33738 (+)
Gene ID: HRGMv2_3185_20_31
Type:
Location: 33860 - 34675 (+)
Gene ID: HRGMv2_3185_20_32
Type: CAZyme
Location: 34672 - 37482 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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