Cluster: HRGMv2_3185_CGC13
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3185
- CGC Family ID: CGCFAM_10325
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3185_4 | HRGMv2_3185_4_52 | 54668 | 56551 | + | 3.A.16.1.2 |
| STP | HRGMv2_3185_4 | HRGMv2_3185_4_53 | 56651 | 56974 | - | Rhodanese |
| pfam | HRGMv2_3185_4 | HRGMv2_3185_4_54 | 57238 | 57633 | + | OAD_gamma |
| TC | HRGMv2_3185_4 | HRGMv2_3185_4_55 | 57652 | 58839 | + | 3.B.1.1.2 |
| pfam | HRGMv2_3185_4 | HRGMv2_3185_4_56 | 58921 | 59406 | - | Acetyltransf_1 | Acetyltransf_10 |
| CAZyme | HRGMv2_3185_4 | HRGMv2_3185_4_57 | 59563 | 60774 | + | GT4 |
| pfam | HRGMv2_3185_4 | HRGMv2_3185_4_58 | 60787 | 61758 | + | GINT1_N |
| CAZyme | HRGMv2_3185_4 | HRGMv2_3185_4_59 | 61752 | 62882 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3185_4 | HRGMv2_3185_4_60 | 62872 | 63780 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3185_4 | HRGMv2_3185_4_61 | 63806 | 64918 | + | GT4 |
| CAZyme | HRGMv2_3185_4 | HRGMv2_3185_4_62 | 64915 | 65853 | + | GT11 |
| CAZyme | HRGMv2_3185_4 | HRGMv2_3185_4_63 | 65866 | 66894 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3185_4 | HRGMv2_3185_4_64 | 66905 | 68455 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3185_4 | HRGMv2_3185_4_65 | 68452 | 69294 | + | GT6 |
Gene ID: HRGMv2_3185_4_52
Type: TC
Location: 54668 - 56551 (+)
Type: TC
Location: 54668 - 56551 (+)
Gene ID: HRGMv2_3185_4_53
Type: STP
Location: 56651 - 56974 (-)
Type: STP
Location: 56651 - 56974 (-)
Gene ID: HRGMv2_3185_4_54
Type: pfam
Location: 57238 - 57633 (+)
Type: pfam
Location: 57238 - 57633 (+)
Gene ID: HRGMv2_3185_4_55
Type: TC
Location: 57652 - 58839 (+)
Type: TC
Location: 57652 - 58839 (+)
Gene ID: HRGMv2_3185_4_56
Type: pfam
Location: 58921 - 59406 (-)
Type: pfam
Location: 58921 - 59406 (-)
Gene ID: HRGMv2_3185_4_57
Type: CAZyme
Location: 59563 - 60774 (+)
Type: CAZyme
Location: 59563 - 60774 (+)
Gene ID: HRGMv2_3185_4_58
Type: pfam
Location: 60787 - 61758 (+)
Type: pfam
Location: 60787 - 61758 (+)
Gene ID: HRGMv2_3185_4_59
Type: CAZyme
Location: 61752 - 62882 (+)
Type: CAZyme
Location: 61752 - 62882 (+)
Gene ID: HRGMv2_3185_4_60
Type:
Location: 62872 - 63780 (+)
Type:
Location: 62872 - 63780 (+)
Gene ID: HRGMv2_3185_4_61
Type: CAZyme
Location: 63806 - 64918 (+)
Type: CAZyme
Location: 63806 - 64918 (+)
Gene ID: HRGMv2_3185_4_62
Type: CAZyme
Location: 64915 - 65853 (+)
Type: CAZyme
Location: 64915 - 65853 (+)
Gene ID: HRGMv2_3185_4_63
Type: CAZyme
Location: 65866 - 66894 (+)
Type: CAZyme
Location: 65866 - 66894 (+)
Gene ID: HRGMv2_3185_4_64
Type:
Location: 66905 - 68455 (+)
Type:
Location: 66905 - 68455 (+)
Gene ID: HRGMv2_3185_4_65
Type: CAZyme
Location: 68452 - 69294 (+)
Type: CAZyme
Location: 68452 - 69294 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp905214345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.