Cluster: HRGMv2_3177_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3177
- CGC Family ID: CGCFAM_00833
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3177_27 | HRGMv2_3177_27_15 | 16615 | 18381 | + | 3.A.2.3.2 |
| TC | HRGMv2_3177_27 | HRGMv2_3177_27_16 | 18381 | 19754 | + | 3.A.2.2.2 |
| TC | HRGMv2_3177_27 | HRGMv2_3177_27_17 | 19775 | 20440 | + | 3.A.2.2.2 |
| NULL(UNKNOWN) | HRGMv2_3177_27 | HRGMv2_3177_27_18 | 20424 | 20963 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3177_27 | HRGMv2_3177_27_19 | 20992 | 22404 | - | GH53 |
Gene ID: HRGMv2_3177_27_15
Type: TC
Location: 16615 - 18381 (+)
Type: TC
Location: 16615 - 18381 (+)
Gene ID: HRGMv2_3177_27_16
Type: TC
Location: 18381 - 19754 (+)
Type: TC
Location: 18381 - 19754 (+)
Gene ID: HRGMv2_3177_27_17
Type: TC
Location: 19775 - 20440 (+)
Type: TC
Location: 19775 - 20440 (+)
Gene ID: HRGMv2_3177_27_18
Type:
Location: 20424 - 20963 (-)
Type:
Location: 20424 - 20963 (-)
Gene ID: HRGMv2_3177_27_19
Type: CAZyme
Location: 20992 - 22404 (-)
Type: CAZyme
Location: 20992 - 22404 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.