Cluster: HRGMv2_3176_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3176
- CGC Family ID: CGCFAM_00281
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3176_1 | HRGMv2_3176_1_213 | 260915 | 262306 | - | 2.A.50.2.1 |
| pfam | HRGMv2_3176_1 | HRGMv2_3176_1_214 | 262553 | 264151 | - | Lactamase_B | RMMBL | Beta-Casp | Lactamase_B_6 |
| TC | HRGMv2_3176_1 | HRGMv2_3176_1_215 | 264359 | 265135 | + | 3.A.1.103.4 |
| TC | HRGMv2_3176_1 | HRGMv2_3176_1_216 | 265135 | 266406 | + | 3.A.1.103.4 |
| pfam | HRGMv2_3176_1 | HRGMv2_3176_1_217 | 266438 | 267538 | + | MetW | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 |
| NULL(UNKNOWN) | HRGMv2_3176_1 | HRGMv2_3176_1_218 | 267558 | 268067 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3176_1 | HRGMv2_3176_1_219 | 268064 | 269146 | + | GT4 |
| CAZyme | HRGMv2_3176_1 | HRGMv2_3176_1_220 | 269435 | 270643 | + | GT4 |
| CAZyme | HRGMv2_3176_1 | HRGMv2_3176_1_221 | 270643 | 271821 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3176_1 | HRGMv2_3176_1_222 | 271818 | 273971 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3176_1 | HRGMv2_3176_1_223 | 273977 | 274939 | + | GT2 |
| CAZyme | HRGMv2_3176_1 | HRGMv2_3176_1_224 | 274926 | 276080 | + | GT4 |
| TC | HRGMv2_3176_1 | HRGMv2_3176_1_225 | 276070 | 277014 | + | 9.B.102.7.10 |
Gene ID: HRGMv2_3176_1_213
Type: TC
Location: 260915 - 262306 (-)
Type: TC
Location: 260915 - 262306 (-)
Gene ID: HRGMv2_3176_1_214
Type: pfam
Location: 262553 - 264151 (-)
Type: pfam
Location: 262553 - 264151 (-)
Gene ID: HRGMv2_3176_1_215
Type: TC
Location: 264359 - 265135 (+)
Type: TC
Location: 264359 - 265135 (+)
Gene ID: HRGMv2_3176_1_216
Type: TC
Location: 265135 - 266406 (+)
Type: TC
Location: 265135 - 266406 (+)
Gene ID: HRGMv2_3176_1_217
Type: pfam
Location: 266438 - 267538 (+)
Type: pfam
Location: 266438 - 267538 (+)
Gene ID: HRGMv2_3176_1_218
Type:
Location: 267558 - 268067 (+)
Type:
Location: 267558 - 268067 (+)
Gene ID: HRGMv2_3176_1_219
Type: CAZyme
Location: 268064 - 269146 (+)
Type: CAZyme
Location: 268064 - 269146 (+)
Gene ID: HRGMv2_3176_1_220
Type: CAZyme
Location: 269435 - 270643 (+)
Type: CAZyme
Location: 269435 - 270643 (+)
Gene ID: HRGMv2_3176_1_221
Type: CAZyme
Location: 270643 - 271821 (+)
Type: CAZyme
Location: 270643 - 271821 (+)
Gene ID: HRGMv2_3176_1_222
Type:
Location: 271818 - 273971 (+)
Type:
Location: 271818 - 273971 (+)
Gene ID: HRGMv2_3176_1_223
Type: CAZyme
Location: 273977 - 274939 (+)
Type: CAZyme
Location: 273977 - 274939 (+)
Gene ID: HRGMv2_3176_1_224
Type: CAZyme
Location: 274926 - 276080 (+)
Type: CAZyme
Location: 274926 - 276080 (+)
Gene ID: HRGMv2_3176_1_225
Type: TC
Location: 276070 - 277014 (+)
Type: TC
Location: 276070 - 277014 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp905199285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.