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Cluster: HRGMv2_2976_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2976_17 HRGMv2_2976_17_15 14607 16895 - 3.A.9.1.2
NULL(UNKNOWN) HRGMv2_2976_17 HRGMv2_2976_17_16 16970 18061 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2976_17 HRGMv2_2976_17_17 18051 18815 - PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_2976_17 HRGMv2_2976_17_18 18826 19629 - 3.A.1.25.4
TC HRGMv2_2976_17 HRGMv2_2976_17_19 19623 20489 - 3.A.1.26.9
TC HRGMv2_2976_17 HRGMv2_2976_17_20 20573 21424 - 3.A.1.26.7
pfam HRGMv2_2976_17 HRGMv2_2976_17_21 21429 22295 - Methyltransf_15 | Methyltrans_SAM
CAZyme HRGMv2_2976_17 HRGMv2_2976_17_22 22308 24806 - GT51
Gene ID: HRGMv2_2976_17_15
Type: TC
Location: 14607 - 16895 (-)
Gene ID: HRGMv2_2976_17_16
Type:
Location: 16970 - 18061 (-)
Gene ID: HRGMv2_2976_17_17
Type: pfam
Location: 18051 - 18815 (-)
Gene ID: HRGMv2_2976_17_18
Type: TC
Location: 18826 - 19629 (-)
Gene ID: HRGMv2_2976_17_19
Type: TC
Location: 19623 - 20489 (-)
Gene ID: HRGMv2_2976_17_20
Type: TC
Location: 20573 - 21424 (-)
Gene ID: HRGMv2_2976_17_21
Type: pfam
Location: 21429 - 22295 (-)
Gene ID: HRGMv2_2976_17_22
Type: CAZyme
Location: 22308 - 24806 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2976_17_21 vegetarian > vegan 1.37578 0.00241

🧭 Explore Read Mapping of CGC

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