Cluster: HRGMv2_2966_CGC3
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2966
- CGC Family ID: CGCFAM_10192
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2966_4 | HRGMv2_2966_4_37 | 41390 | 42961 | + | 8.A.3.1.2 |
| TC | HRGMv2_2966_4 | HRGMv2_2966_4_38 | 43034 | 44566 | + | 8.A.3.2.3 |
| TC | HRGMv2_2966_4 | HRGMv2_2966_4_39 | 44624 | 46606 | + | 9.B.18.2.1 |
| TC | HRGMv2_2966_4 | HRGMv2_2966_4_40 | 47231 | 48655 | + | 1.A.26.1.3 |
| pfam | HRGMv2_2966_4 | HRGMv2_2966_4_41 | 49031 | 51430 | + | UvrD-helicase | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor |
| pfam | HRGMv2_2966_4 | HRGMv2_2966_4_42 | 51535 | 52932 | + | tRNA-synt_2b | HGTP_anticodon | ProRS-C_1 |
| TC | HRGMv2_2966_4 | HRGMv2_2966_4_43 | 53256 | 54116 | + | 2.A.103.1.3 |
| NULL(UNKNOWN) | HRGMv2_2966_4 | HRGMv2_2966_4_44 | 54554 | 56023 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2966_4 | HRGMv2_2966_4_45 | 56148 | 56654 | + | MarR |
| TC | HRGMv2_2966_4 | HRGMv2_2966_4_46 | 56651 | 58426 | + | 3.A.1.135.5 |
| TC | HRGMv2_2966_4 | HRGMv2_2966_4_47 | 58426 | 60375 | + | 3.A.1.135.5 |
| TC | HRGMv2_2966_4 | HRGMv2_2966_4_48 | 60455 | 61099 | - | 1.A.62.2.1 |
| CAZyme | HRGMv2_2966_4 | HRGMv2_2966_4_49 | 61142 | 62884 | - | GH181 |
| NULL(UNKNOWN) | HRGMv2_2966_4 | HRGMv2_2966_4_50 | 62898 | 64391 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2966_4 | HRGMv2_2966_4_51 | 64554 | 66074 | - | LRR_5 |
| CAZyme | HRGMv2_2966_4 | HRGMv2_2966_4_52 | 66285 | 67541 | + | GH109 |
Gene ID: HRGMv2_2966_4_37
Type: TC
Location: 41390 - 42961 (+)
Type: TC
Location: 41390 - 42961 (+)
Gene ID: HRGMv2_2966_4_38
Type: TC
Location: 43034 - 44566 (+)
Type: TC
Location: 43034 - 44566 (+)
Gene ID: HRGMv2_2966_4_39
Type: TC
Location: 44624 - 46606 (+)
Type: TC
Location: 44624 - 46606 (+)
Gene ID: HRGMv2_2966_4_40
Type: TC
Location: 47231 - 48655 (+)
Type: TC
Location: 47231 - 48655 (+)
Gene ID: HRGMv2_2966_4_41
Type: pfam
Location: 49031 - 51430 (+)
Type: pfam
Location: 49031 - 51430 (+)
Gene ID: HRGMv2_2966_4_42
Type: pfam
Location: 51535 - 52932 (+)
Type: pfam
Location: 51535 - 52932 (+)
Gene ID: HRGMv2_2966_4_43
Type: TC
Location: 53256 - 54116 (+)
Type: TC
Location: 53256 - 54116 (+)
Gene ID: HRGMv2_2966_4_44
Type:
Location: 54554 - 56023 (+)
Type:
Location: 54554 - 56023 (+)
Gene ID: HRGMv2_2966_4_45
Type: TF
Location: 56148 - 56654 (+)
Type: TF
Location: 56148 - 56654 (+)
Gene ID: HRGMv2_2966_4_46
Type: TC
Location: 56651 - 58426 (+)
Type: TC
Location: 56651 - 58426 (+)
Gene ID: HRGMv2_2966_4_47
Type: TC
Location: 58426 - 60375 (+)
Type: TC
Location: 58426 - 60375 (+)
Gene ID: HRGMv2_2966_4_48
Type: TC
Location: 60455 - 61099 (-)
Type: TC
Location: 60455 - 61099 (-)
Gene ID: HRGMv2_2966_4_49
Type: CAZyme
Location: 61142 - 62884 (-)
Type: CAZyme
Location: 61142 - 62884 (-)
Gene ID: HRGMv2_2966_4_50
Type:
Location: 62898 - 64391 (-)
Type:
Location: 62898 - 64391 (-)
Gene ID: HRGMv2_2966_4_51
Type: pfam
Location: 64554 - 66074 (-)
Type: pfam
Location: 64554 - 66074 (-)
Gene ID: HRGMv2_2966_4_52
Type: CAZyme
Location: 66285 - 67541 (+)
Type: CAZyme
Location: 66285 - 67541 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS1696
Species
UMGS1696 sp900554225
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2966_4_41 | vegan > omnivore | 1.57960 | 0.03783 |
| HRGMv2_2966_4_48 | vegan > omnivore | 3.33130 | 0.03783 |
| HRGMv2_2966_4_50 | vegan > omnivore | 1.38168 | 0.03783 |