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Cluster: HRGMv2_2939_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2939_5 HRGMv2_2939_5_3 2761 4371 - CE3
pfam HRGMv2_2939_5 HRGMv2_2939_5_4 4387 5652 - Glyco_hydro_76
NULL(UNKNOWN) HRGMv2_2939_5 HRGMv2_2939_5_5 5666 6343 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2939_5 HRGMv2_2939_5_6 6456 7346 - 3.A.1.1.10
TC HRGMv2_2939_5 HRGMv2_2939_5_7 7361 8320 - 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_2939_5 HRGMv2_2939_5_8 8349 10055 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2939_5 HRGMv2_2939_5_9 10163 11278 - GntR
CAZyme HRGMv2_2939_5 HRGMv2_2939_5_10 11582 14788 + GH38
TC HRGMv2_2939_5 HRGMv2_2939_5_11 14962 16710 - 2.A.58.2.2
pfam HRGMv2_2939_5 HRGMv2_2939_5_12 17017 17532 + QueT
TC HRGMv2_2939_5 HRGMv2_2939_5_13 17529 18023 + 2.A.87.3.1
Gene ID: HRGMv2_2939_5_3
Type: CAZyme
Location: 2761 - 4371 (-)
Gene ID: HRGMv2_2939_5_4
Type: pfam
Location: 4387 - 5652 (-)
Gene ID: HRGMv2_2939_5_5
Type:
Location: 5666 - 6343 (-)
Gene ID: HRGMv2_2939_5_6
Type: TC
Location: 6456 - 7346 (-)
Gene ID: HRGMv2_2939_5_7
Type: TC
Location: 7361 - 8320 (-)
Gene ID: HRGMv2_2939_5_8
Type:
Location: 8349 - 10055 (-)
Gene ID: HRGMv2_2939_5_9
Type: TF
Location: 10163 - 11278 (-)
Gene ID: HRGMv2_2939_5_10
Type: CAZyme
Location: 11582 - 14788 (+)
Gene ID: HRGMv2_2939_5_11
Type: TC
Location: 14962 - 16710 (-)
Gene ID: HRGMv2_2939_5_12
Type: pfam
Location: 17017 - 17532 (+)
Gene ID: HRGMv2_2939_5_13
Type: TC
Location: 17529 - 18023 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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