dbCAN Logo

Cluster: HRGMv2_2921_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2921_18 HRGMv2_2921_18_34 29120 30469 - 2.A.66.1.26
TF HRGMv2_2921_18 HRGMv2_2921_18_35 30624 31082 + HTH_11
TC HRGMv2_2921_18 HRGMv2_2921_18_36 31544 32245 + 9.B.18.1.2
pfam HRGMv2_2921_18 HRGMv2_2921_18_37 32569 33852 + Glyphos_transf
CAZyme HRGMv2_2921_18 HRGMv2_2921_18_38 33906 35060 + GT2
CAZyme HRGMv2_2921_18 HRGMv2_2921_18_39 35026 36036 + GT2
NULL(UNKNOWN) HRGMv2_2921_18 HRGMv2_2921_18_40 36053 37612 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2921_18 HRGMv2_2921_18_41 37701 38912 + Wzy_C
CAZyme HRGMv2_2921_18 HRGMv2_2921_18_42 38878 39693 + GT2
NULL(UNKNOWN) HRGMv2_2921_18 HRGMv2_2921_18_43 39707 40540 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2921_18 HRGMv2_2921_18_44 40509 41693 + GT4
Gene ID: HRGMv2_2921_18_34
Type: TC
Location: 29120 - 30469 (-)
Gene ID: HRGMv2_2921_18_35
Type: TF
Location: 30624 - 31082 (+)
Gene ID: HRGMv2_2921_18_36
Type: TC
Location: 31544 - 32245 (+)
Gene ID: HRGMv2_2921_18_37
Type: pfam
Location: 32569 - 33852 (+)
Gene ID: HRGMv2_2921_18_38
Type: CAZyme
Location: 33906 - 35060 (+)
Gene ID: HRGMv2_2921_18_39
Type: CAZyme
Location: 35026 - 36036 (+)
Gene ID: HRGMv2_2921_18_40
Type:
Location: 36053 - 37612 (+)
Gene ID: HRGMv2_2921_18_41
Type: pfam
Location: 37701 - 38912 (+)
Gene ID: HRGMv2_2921_18_42
Type: CAZyme
Location: 38878 - 39693 (+)
Gene ID: HRGMv2_2921_18_43
Type:
Location: 39707 - 40540 (+)
Gene ID: HRGMv2_2921_18_44
Type: CAZyme
Location: 40509 - 41693 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List