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Cluster: HRGMv2_2871_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2871_7 HRGMv2_2871_7_49 56087 57820 + GH2
STP HRGMv2_2871_7 HRGMv2_2871_7_50 57841 59187 + SBP_bac_1
TC HRGMv2_2871_7 HRGMv2_2871_7_51 59207 60112 + 3.A.1.1.20
TC HRGMv2_2871_7 HRGMv2_2871_7_52 60124 60966 + 3.A.1.1.11
pfam HRGMv2_2871_7 HRGMv2_2871_7_53 60981 62834 + CBM9_1 | CBM9_1 | CBM9_1
CAZyme HRGMv2_2871_7 HRGMv2_2871_7_54 62853 65318 + CBM66 | GH43_32
pfam HRGMv2_2871_7 HRGMv2_2871_7_55 65366 66265 + Cohesin
NULL(UNKNOWN) HRGMv2_2871_7 HRGMv2_2871_7_56 66293 67066 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2871_7 HRGMv2_2871_7_57 67104 70190 + CE20
Gene ID: HRGMv2_2871_7_49
Type: CAZyme
Location: 56087 - 57820 (+)
Gene ID: HRGMv2_2871_7_50
Type: STP
Location: 57841 - 59187 (+)
Gene ID: HRGMv2_2871_7_51
Type: TC
Location: 59207 - 60112 (+)
Gene ID: HRGMv2_2871_7_52
Type: TC
Location: 60124 - 60966 (+)
Gene ID: HRGMv2_2871_7_53
Type: pfam
Location: 60981 - 62834 (+)
Gene ID: HRGMv2_2871_7_54
Type: CAZyme
Location: 62853 - 65318 (+)
Gene ID: HRGMv2_2871_7_55
Type: pfam
Location: 65366 - 66265 (+)
Gene ID: HRGMv2_2871_7_56
Type:
Location: 66293 - 67066 (+)
Gene ID: HRGMv2_2871_7_57
Type: CAZyme
Location: 67104 - 70190 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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