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Cluster: HRGMv2_2871_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2871_19 HRGMv2_2871_19_1 37 906 - CBM50 | GH18
TF HRGMv2_2871_19 HRGMv2_2871_19_2 936 1844 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2871_19 HRGMv2_2871_19_3 1957 3153 + GH109
TF HRGMv2_2871_19 HRGMv2_2871_19_4 3217 4185 - HTH_5
NULL(UNKNOWN) HRGMv2_2871_19 HRGMv2_2871_19_5 4319 5422 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2871_19 HRGMv2_2871_19_6 5469 6887 - CBM35 | GH26
CAZyme HRGMv2_2871_19 HRGMv2_2871_19_7 6918 8678 - CBM35 | GH26
pfam HRGMv2_2871_19 HRGMv2_2871_19_8 8741 9484 - ThuA
NULL(UNKNOWN) HRGMv2_2871_19 HRGMv2_2871_19_9 9538 10830 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2871_19 HRGMv2_2871_19_10 10898 11941 - GH130_2
NULL(UNKNOWN) HRGMv2_2871_19 HRGMv2_2871_19_11 12044 16759 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2871_19 HRGMv2_2871_19_12 16784 18292 - SBP_bac_1
TC HRGMv2_2871_19 HRGMv2_2871_19_13 18352 19350 - 3.A.1.1.11
TC HRGMv2_2871_19 HRGMv2_2871_19_14 19372 20271 - 3.A.1.1.25
pfam HRGMv2_2871_19 HRGMv2_2871_19_15 20303 22450 - DUF5696 | DUF5696
pfam HRGMv2_2871_19 HRGMv2_2871_19_16 22459 24600 - NHL | Yip1
TC HRGMv2_2871_19 HRGMv2_2871_19_17 24623 25495 - 3.A.1.1.34
TC HRGMv2_2871_19 HRGMv2_2871_19_18 25536 26465 - 3.A.1.1.11
STP HRGMv2_2871_19 HRGMv2_2871_19_19 26501 29410 - SBP_bac_1
TF HRGMv2_2871_19 HRGMv2_2871_19_20 30043 31068 + LacI
TC HRGMv2_2871_19 HRGMv2_2871_19_21 31327 31740 + 9.A.11.1.1
TC HRGMv2_2871_19 HRGMv2_2871_19_22 31753 32769 + 9.A.11.1.1
CAZyme HRGMv2_2871_19 HRGMv2_2871_19_23 33362 36091 + GH2
Gene ID: HRGMv2_2871_19_1
Type: CAZyme
Location: 37 - 906 (-)
Gene ID: HRGMv2_2871_19_2
Type: TF
Location: 936 - 1844 (-)
Gene ID: HRGMv2_2871_19_3
Type: CAZyme
Location: 1957 - 3153 (+)
Gene ID: HRGMv2_2871_19_4
Type: TF
Location: 3217 - 4185 (-)
Gene ID: HRGMv2_2871_19_5
Type:
Location: 4319 - 5422 (-)
Gene ID: HRGMv2_2871_19_6
Type: CAZyme
Location: 5469 - 6887 (-)
Gene ID: HRGMv2_2871_19_7
Type: CAZyme
Location: 6918 - 8678 (-)
Gene ID: HRGMv2_2871_19_8
Type: pfam
Location: 8741 - 9484 (-)
Gene ID: HRGMv2_2871_19_9
Type:
Location: 9538 - 10830 (-)
Gene ID: HRGMv2_2871_19_10
Type: CAZyme
Location: 10898 - 11941 (-)
Gene ID: HRGMv2_2871_19_11
Type:
Location: 12044 - 16759 (-)
Gene ID: HRGMv2_2871_19_12
Type: STP
Location: 16784 - 18292 (-)
Gene ID: HRGMv2_2871_19_13
Type: TC
Location: 18352 - 19350 (-)
Gene ID: HRGMv2_2871_19_14
Type: TC
Location: 19372 - 20271 (-)
Gene ID: HRGMv2_2871_19_15
Type: pfam
Location: 20303 - 22450 (-)
Gene ID: HRGMv2_2871_19_16
Type: pfam
Location: 22459 - 24600 (-)
Gene ID: HRGMv2_2871_19_17
Type: TC
Location: 24623 - 25495 (-)
Gene ID: HRGMv2_2871_19_18
Type: TC
Location: 25536 - 26465 (-)
Gene ID: HRGMv2_2871_19_19
Type: STP
Location: 26501 - 29410 (-)
Gene ID: HRGMv2_2871_19_20
Type: TF
Location: 30043 - 31068 (+)
Gene ID: HRGMv2_2871_19_21
Type: TC
Location: 31327 - 31740 (+)
Gene ID: HRGMv2_2871_19_22
Type: TC
Location: 31753 - 32769 (+)
Gene ID: HRGMv2_2871_19_23
Type: CAZyme
Location: 33362 - 36091 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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